Gene detail

Detail information of GWHGAAEX013949/evm.TU.scaffold_54.178

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|88604358\|ref\|YP_504536.1\|	3.00E-29	peptidase C1A, papain [Methanospirillum hungatei JF-1]
KOG	KOG1542	2.00E-171	Cysteine proteinase Cathepsin F
nr	gi\|743862690\|ref\|XP_010943608.1\|	0	PREDICTED: cysteine proteinase 1-like [Elaeis guineensis]
Swissprot	tr\|Q10716\|CYSP1_MAIZE	5.00E-178	Cysteine proteinase 1 (Precursor)
trEMBL	tr\|Q945R8\|Q945R8_SANAU	0	Cysteine proteinase {ECO:0000313\|EMBL:AAL05851.1} (Fragment)
TAIR	AT4G39090	2.00E-171	Papain family cysteine protease

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000059	4584512	4587613	+

Transcript Sequence
>GWHTAAEX013949 CCCAATGACTGGCTCTTCGCTCCTCCCCTTCCTCATCCTCCTTGCCGCGGTAGTCTCCGCCATCGAGGAAGAGCAGATTATACGGCAGGTTGTGAACGGAATGGCCAACGTTGATTCTGAGGACGAGCTGATGCTGAACGCGGAGGCCCATTTCTGGAGCTTCCTCCGTAGCTACGGGAAGAAGTACTCAGATGCCGATGAGCACGCTCACCGCTTCAAAATCTTCAAATCCAACCTCAGGCGGGCTTGGAGGCACCAGAAGCTCGATCCCTCTGCAGTTTATGGCGTCACCAAGTTCTCTGACTTAACTCCTGCGGAGTTCCGGCGGAAATATCTTGGGACTCGGAAGGTGCGTCGATCTCTGTCGAATATCCATGATGCCTCCGTTCTACCGACGAACGATCTTCCAACGGATTTTGACTGGAGGGATCAAGGGGCCGTAACTGGCGTGAAGGATCAGGGATCTTGTGGATCTTGCTGGTCGTTCAGTGCGGCTGGGGCATTGGAAGGGGCTAATTTCTTGGCCACTGGCAGTCTTGTGAGTCTCAGCGAGCAACAGATGGTTGATTGTGATCACATGTGCGATGAGTCGGAGCCCGACGCCTGCGATTCGGGATGCAGTGGGGGGCTGATGACGACTGCTTTCGAGTATTTGCTCAAGTCAGGTGGGCTGGAGACGGAGGCAGACTACCCGTACACCGGCACTGACCGCTCTGACTGCAAATTTAGAGAGGAAAAGATTGCAGCTTCTGTATCCAACTTCAGCGTTGTCCCAATTGATGAAGATCAAATCGCCGCAAACCTCGTAAAGCACGGTCCTCTTGCAGTGGCCATCAACGCGCTGTACATGCAGTTCTACATTCGCGGCGTGTCCTGTCCGTACGTGTGCAGCAGGAATTTGGATCACGGGGTGCTGCTCGTGGGTTTCGGCTCCGCAGGCTACGCTCCGGTTCGCATTAAGAGCAAGCCGTACTGGATCATCAAGAACTCGTGGGGCGAAAACTGGGGCGAAGACGGCTACTATAAGGTCTGCAAGGGACGCAACATCTGCGGGGTCGAGTCCCAGGTCTCCACCGTCACCGCCGCCAGCACGCCGCACCATCATCTTGATAGTGAATCGCAAAGCAGCTAAAATAACTCCCAACTGTGTATTCGTTAACTTAATATTTTAATCTGTTTCAGTTCTAACACATAATAATGACTTTCAAAGCAATTGTAAAGAGGCAGTGCTGATCTTCTATGGATTGATTAATGACAGCCGGCCAGCCGTTTTATTTCATATGTGCAGTTTGTAATTTAGACGGTATCCATTCCATTGCTAGACTGAAGGTGCTCTCAATCATGTGGAATAAAAATCAAGGCATTATAATTGTTTTTTGAAATTAGATTTGCTTAAAATATAAATCAATTGTATGATTAGTGGGATTTGAATCCGGACTTGGAATAACAAATTTTGAG

Network for GWHGAAEX013949

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08246.11	Inhibitor_I29	50	106	1.40E-12
PF00112.22	Peptidase_C1	134	358	4.30E-73

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01373	CTSF	Lysosome	map04142
		Apoptosis	map04210
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006508	Biological Process	proteolysis
GO:0008234	Molecular Function	cysteine-type peptidase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.970
SRP064423	SRR2545915	Juvenile tuber	3.560
SRP108465	SRR5643513	five period of Gastrodia elata	15.700
	SRR5643514	five period of Gastrodia elata	22.060
	SRR5643515	five period of Gastrodia elata	10.300
	SRR5643524	five period of Gastrodia elata	13.150
	SRR5643525	five period of Gastrodia elata	108.560
	SRR5643528	five period of Gastrodia elata	75.330
	SRR5643658	five period of Gastrodia elata	112.710
	SRR5643659	five period of Gastrodia elata	0.560
	SRR5643660	five period of Gastrodia elata	0.910
	SRR5643661	five period of Gastrodia elata	0.510
	SRR5643662	five period of Gastrodia elata	2.670
	SRR5643663	five period of Gastrodia elata	1.890
	SRR5643664	five period of Gastrodia elata	5.580
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.750
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.340
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.590
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.510
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.950
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.030
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.890
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.830
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.820
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.920
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.530
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.530
SRP279888	Gastro	Gastrodia elata tuber	3.31
	Juven	Juvenile tuber	92.42
	Mother_Gastro	Mother tuber of Gastrodia elata	50.22
	Mother_Juven	Mother tuber of Juvenile	20.00