Detail information of GWHGAAEX014337/evm.TU.scaffold_59.90


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|108762272|ref|YP_629357.1|2.00E-118ABC transporter permease [Myxococcus xanthus DK 1622]
KOGKOG00580Peptide exporter, ABC superfamily
nrgi|743822310|ref|XP_010932244.1|0PREDICTED: ABC transporter B family member 26, chloroplastic [Elaeis guineensis]
Swissprottr|Q8RY46|AB26B_ARATH0ABC transporter B family member 26, chloroplastic (Precursor)
trEMBLtr|F6GZ17|F6GZ17_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB45203.1}
TAIRAT1G706100transporter associated with antigen processing protein 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000006815437091623792-
Transcript Sequence

Network for GWHGAAEX014337

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00664.22ABC_membrane1554202.30E-35
PF00005.26ABC_tran4886356.60E-33
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05656ABCB9, TAPL ABC transporters map02010
Lysosomemap04142

Gene Ontology

GO term OntologyName
GO:0055085Biological Processtransmembrane transport
GO:0042626Molecular FunctionATPase activity, coupled to transmembrane movement of substances
GO:0016887Molecular FunctionATPase activity
GO:0005524Molecular FunctionATP binding
GO:0016021Cellular Componentintegral component of membrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms16.790
SRR2545915Juvenile tuber15.360
SRP108465SRR5643513five period of Gastrodia elata17.310
SRR5643514five period of Gastrodia elata20.150
SRR5643515five period of Gastrodia elata18.990
SRR5643524five period of Gastrodia elata20.990
SRR5643525five period of Gastrodia elata14.060
SRR5643528five period of Gastrodia elata14.130
SRR5643658five period of Gastrodia elata13.000
SRR5643659five period of Gastrodia elata18.640
SRR5643660five period of Gastrodia elata20.070
SRR5643661five period of Gastrodia elata17.880
SRR5643662five period of Gastrodia elata14.950
SRR5643663five period of Gastrodia elata19.240
SRR5643664five period of Gastrodia elata18.270
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_118.400
SRR6049655Rhizomagastrodiae_C368-T10_good_112.510
SRR6049656Rhizomagastrodiae_C368-T07_good_122.200
SRR6049657Rhizomagastrodiae_C368-T07_good_116.760
SRR6049658Rhizomagastrodiae_C368-T04_good_123.530
SRR6049659Rhizomagastrodiae_C368-T04_good_121.000
SRR6049660Rhizomagastrodiae_C368-T01_good_119.620
SRR6049661Rhizomagastrodiae_C368-T04_good_120.200
SRR6049662Rhizomagastrodiae_C368-T01_good_119.800
SRR6049663Rhizomagastrodiae_C368-T01_good_121.400
SRR6049664Rhizomagastrodiae_C368-T10_good_118.400
SRR6049665Rhizomagastrodiae_C368-T10_good_118.400
SRP279888GastroGastrodia elata tuber 18.92
JuvenJuvenile tuber28.29
Mother_GastroMother tuber of Gastrodia elata 37.77
Mother_JuvenMother tuber of Juvenile 35.62