Detail information of GWHGAAEX014615/evm.TU.scaffold_60.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|357420325|ref|YP_004933317.1|5.00E-20V-type ATPase 116 kDa subunit [Thermovirga lienii DSM 17291]
KOGKOG21890Vacuolar H+-ATPase V0 sector, subunit a
nrgi|743829225|ref|XP_010934090.1|0PREDICTED: V-type proton ATPase subunit a3-like [Elaeis guineensis]
Swissprottr|Q8W4S4|VHAA3_ARATH0V-type proton ATPase subunit a3
trEMBLtr|M0SZQ0|M0SZQ0_MUSAM0V-type proton ATPase subunit a {ECO:0000256|RuleBase:RU361189}
TAIRAT2G214100vacuolar proton ATPase A2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000612289460085+
Transcript Sequence

Network for GWHGAAEX014615

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01496.18V_ATPase_I428153.80E-299
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02154ATPeV0A, ATP6N Metabolic pathways map01100
Oxidative phosphorylationmap00190
Phagosomemap04145
Lysosomemap04142
Collecting duct acid secretionmap04966
Synaptic vesicle cyclemap04721

Gene Ontology

GO term OntologyName
GO:1902600Biological Processhydrogen ion transmembrane transport
GO:0015078Molecular Functionhydrogen ion transmembrane transporter activity
GO:0000220Cellular Componentvacuolar proton-transporting V-type ATPase, V0 domain
GO:0033179Cellular Componentproton-transporting V-type ATPase, V0 domain

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms110.610
SRR2545915Juvenile tuber146.310
SRP108465SRR5643513five period of Gastrodia elata50.420
SRR5643514five period of Gastrodia elata50.760
SRR5643515five period of Gastrodia elata48.270
SRR5643524five period of Gastrodia elata49.490
SRR5643525five period of Gastrodia elata49.690
SRR5643528five period of Gastrodia elata57.410
SRR5643658five period of Gastrodia elata69.000
SRR5643659five period of Gastrodia elata49.140
SRR5643660five period of Gastrodia elata52.640
SRR5643661five period of Gastrodia elata52.730
SRR5643662five period of Gastrodia elata41.740
SRR5643663five period of Gastrodia elata47.970
SRR5643664five period of Gastrodia elata48.820
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_161.850
SRR6049655Rhizomagastrodiae_C368-T10_good_165.490
SRR6049656Rhizomagastrodiae_C368-T07_good_167.670
SRR6049657Rhizomagastrodiae_C368-T07_good_165.220
SRR6049658Rhizomagastrodiae_C368-T04_good_168.040
SRR6049659Rhizomagastrodiae_C368-T04_good_166.850
SRR6049660Rhizomagastrodiae_C368-T01_good_169.530
SRR6049661Rhizomagastrodiae_C368-T04_good_171.030
SRR6049662Rhizomagastrodiae_C368-T01_good_156.210
SRR6049663Rhizomagastrodiae_C368-T01_good_157.400
SRR6049664Rhizomagastrodiae_C368-T10_good_158.180
SRR6049665Rhizomagastrodiae_C368-T10_good_158.180
SRP279888GastroGastrodia elata tuber 82.05
JuvenJuvenile tuber77.99
Mother_GastroMother tuber of Gastrodia elata 52.47
Mother_JuvenMother tuber of Juvenile 75.36