Detail information of GWHGAAEX014682/evm.TU.scaffold_60.117
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|116622194|ref|YP_824350.1| | 7.00E-68 | beta-N-acetylhexosaminidase [Candidatus Solibacter usitatus Ellin6076] |
| KOG | KOG2499 | 0 | Beta-N-acetylhexosaminidase |
| nr | gi|743842390|ref|XP_010937791.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: beta-hexosaminidase 1, partial [Elaeis guineensis] |
| Swissprot | tr|A7WM73|HEXO1_ARATH | 0 | Beta-hexosaminidase 1 (Precursor) |
| trEMBL | tr|K3Z575|K3Z575_SETIT | 0 | Beta-hexosaminidase {ECO:0000256|PIRNR:PIRNR001093} |
| TAIR | AT3G55260 | 0 | beta-hexosaminidase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000061 | 3984003 | 4058061 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX014682
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14845.5 | Glycohydro_20b2 | 45 | 166 | 2.10E-16 |
| PF00728.21 | Glyco_hydro_20 | 191 | 495 | 1.50E-75 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH20 |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004563 | Molecular Function | beta-N-acetylhexosaminidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.560 |
| SRR2545915 | Juvenile tuber | 10.290 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 18.220 |
| SRR5643514 | five period of Gastrodia elata | 16.240 | |
| SRR5643515 | five period of Gastrodia elata | 15.630 | |
| SRR5643524 | five period of Gastrodia elata | 13.820 | |
| SRR5643525 | five period of Gastrodia elata | 17.830 | |
| SRR5643528 | five period of Gastrodia elata | 15.110 | |
| SRR5643658 | five period of Gastrodia elata | 22.220 | |
| SRR5643659 | five period of Gastrodia elata | 8.420 | |
| SRR5643660 | five period of Gastrodia elata | 6.310 | |
| SRR5643661 | five period of Gastrodia elata | 8.220 | |
| SRR5643662 | five period of Gastrodia elata | 7.360 | |
| SRR5643663 | five period of Gastrodia elata | 8.620 | |
| SRR5643664 | five period of Gastrodia elata | 8.310 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 27.500 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 27.560 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 28.070 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 31.950 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 34.650 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 36.710 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 33.730 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 36.370 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 27.550 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 27.340 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 22.160 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 22.160 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.67 |
| Juven | Juvenile tuber | 23.58 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.64 | |
| Mother_Juven | Mother tuber of Juvenile | 15.10 |