Gene detail

Detail information of GWHGAAEX015468/evm.TU.scaffold_67.71

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1062	Vesicle coat complex AP-1, gamma subunit
nr	gi\|743883903\|ref\|XP_010909540.1\|	PREDICTED: AP-4 complex subunit epsilon isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q8L7A9\|AP4E_ARATH	AP-4 complex subunit epsilon
trEMBL	tr\|U5GHH1\|U5GHH1_POPTR	Uncharacterized protein {ECO:0000313\|EMBL:ERP62950.1}
TAIR	AT1G31730	Adaptin family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000065	3692981	3726033	-

Transcript Sequence
>GWHTAAEX015468 CTCTCGAAGCCTACTGATTCCCCTCCTGGGAGGGCAGTGATAGGACTAGCACGAAGAGGGTGAATGACGAATGATCATTGCAGGCTATAGATCCACTGCAAGTAAGGGGAGAAGAAGAAGGCATTTGACTGGGAGGAGTAAGATTCTCCGTTTCAGAATCTCATAGTTTGCCATTAAGGCGCAGTACTCTCGGTACCGGAGAGATCGTTCACGGCCTTTAGCCGGATGAGTAACATTTGTAGGTTGATTTGATTCGCTGGTGACGGAGCACAGAAGGTGGTTTTGTTTTTTTATTTTTTCCCTAGAAACTGGGATAGGATCTAATCGAAGGTTGCGAATTGTCTACCAGTCCGGTTGTAATTTACATAATTCGATTATTTTTTCATCTTTATTTTTCTACAACTTGGATCTGGATCTCGACTGAAGCTGAACGGTTTGGCCGTATATTGAGGATGGAGCAGCTGAAGACGATCGGGAGGGAGCTCGCAATGGGCTCCCAGGGAGGTTGGGGCCAGTCTAAGGAATTCCTGGATCTAGTTAAGTCTATCGGCGAGGCACGTTCGAAGGTGGAAGAGGACCGTATCGTTCTCCGTGAGATCGAGACCTTAAAACGCCGGATCGCGGAGCCGGATGTTCCTCGCCGCAAGATGAAAGAATACATTATACGCCTGGTCTATGTCGAGATGCTCGGTCATGATGCCTCCTTTGGTTATATTCACGCCGTGAAGATGACTCACGACGACAACGTTTCCCATAAAAGAACCGGTTATCTTGCCGTCACTCTCTTCTTAAACGAGGATCATGATCTTATCATCCTCATTGTAAACACTATTCAGAAGGATTTGAGGTCTGACAATTACTTGGTGGTTTGCGCGGCCCTGACAGCAGTTTGTAAACTCATCAACGAAGAGACTATTCCAGCAGTGTTGCCACAAGTGGTGGAGCTTGTAAGCCACGCCAAGGAAGCTGTAAGGAAGAAGGCAGTCATGGCACTGCACAGGTTCTACCAGCGTGCTCCAACCTCTGTTGCTCATCTCCTCACAAATTTCAGGAAGAGGCTTTCTGATAATGATCCTGGAGTAATGGGCGCATCATTGTGTCCTCTCTTTGATCTTATCACTGCTGATGTAAACTCGTACAGGGATCTGGTTATCAGTTTTGTTAGTATTCTTAAACAAGTAGCTGAAAGGAAACTTCCAAAGGCATTTGATTACCATCAAATGCCTGCTCCATTCATTCAGGTGAAGTTATTAAAAATTCTTGCATTGTTGGGTAGTGGCGATAAGCAGGCTAGTGGACATATGTACACTGTGCTTAGTGACATAATTAGGCGGATTGAAACATCGAGCAATATTGGAAATGCTGTGCTTTATGAATGCATTTGCTGTGTTTCTTCCATCTTTCCAAATACAAAGTTATTGAATGCTGCCATTGAAGCGACTTCAAAATTTCTGAAGAGTGATAGTCATAATCTTAAATATATGGGGATTGATGCTCTTGGTCGACTTATTAAGATAAACCCGGACATTGCTGAGGAGCATCAACTAGCCGTTATTGATTGCTTGGAGGATCCTGATGATACATTAAAGCGGAAGACTTTTGAGTTACTTTATAAGATGACAAAGTCATCCAATGTTGAAGTCATTGTTGATCGGATGATTGATTACATGATTAGCATCAATGATAATCATTATAAAACTGAAATAGCTTCCCGTTGCGTTCAGCTTGCTGAACAATTTGCACCAAGCAACCATTGGTTTATTCAGACTATGAATAAAGTCTTCCAGCATGCTGGTGATCTTGTAAGTGTAAAAGTGGCGCACAATCTGATGAGGCTTATAGCAGAAGGGTTTGGAGAAGATGATGCTAGTGCAGATAGCCAATTAAGATCATCAGCTCTTAGCTCATATTTGGGTATAATTGGCGAGCCAAAACTTCCATCGATGTTCCTACAAGTCATTTGTTGGGTCCTGGGGGAGTATGGGACAGCTGATGGGATTTATTCTGCATCACATATGATTGGAAAGTTATGTGATGTAGCAGAAGCCCATCCAAATGACAACACTGTAAAGGCTTATGCATTAACAGGTATCATGAAAATCTGCGCATTTGAAATTACAGCTGGGAGGAAAGTTGAAATGCTGTCCGAGTGTCAATCTCTAATCCAAGAACTGTCGGCATCCAGTTCAACTGATCTGCAGCAGCGTGCATATGAGCTACAAGCTTTGTTAGGTTTGGACGGTCACGCTGTTGAACACGTGATGCCATTGGATGCAAGCTGCGAAGACATTGAGGTCGATAAAAATTTATCGTTTCTGAACAAATTCGTTCAACAATCCATAGAGAGAGGCTCGCAGCCGTACATCCCCGAAAGCGAGCGGTCCCGATTCCCAGAGGCTAACCAGCATGAGCACAATGCCGGCGGCCTGAGGTTCGAGGCGTACGAGCTTCCCAAGCCTTTGCTGCCCCCGACGACAAACGCGTCTCCCGCCCCTCGACCGCCGCCGGCCGCCGACATCCTCCTGATTTCCGGTCTGCCTCCGTATTTGGCTGAAAGCAGCAACCCAAACCCTAGCCCCGTCCAGGCTAACTCCGGAATCCAGCTTCGGCTCGATGGCGTGCAGAAGAAGTGGGGAAGGCCGCGGTATTCGACTTCCTCCTCTGGCTCTATCACGAACAGCAATGCCGTAAACGGGGCCACGCATATGGACGAAACGACGCTCGCTGCTTCGCCGGCACGGGATTTCTCAAATAGGAAGCAGCCGCAGGTCGAGGCATCCTCCGCCGAAAAGCAGAGATTAGCGGCTTCTCTGTTCGGCAAATCATCCAAATCTGAAAAGAAAGCTCCATCCGTCGTTCCCCCCCCCAGGGCTCCCGAGATTGAATCCTCAAAAACGGCCCCAACCTCAAAGCCTCTAAAAGAAATCTCCGGCCCCATCGATTTGCTCGATTTCAAAGACTCCGTTTCTTCAGTCTCCGCCCCGCCAGAGGATCCGTTTAAACAGTTGGAAGGCCTCGTTGCTCCCGAGGCTCATGACGTCATGGGATTATACGGCGGCGGCGGCGGCGGCGATGCGGAAACATTAGGTCCGGTGATGATGAACTATCAAGGAGGGAGCAGGAAGGGGCCGAATCCGCGGGACGCTTTGGAGAAGGATTTGGCGGCGAGGCAGGTCGGCGTGACGCCAACCGGCAATAACCCGCTCCTGTTCAGGGACCTGCTGGGCTGAGAAATTATAAGAAGAAGAAGAAGAAGAAGAA

Network for GWHGAAEX015468

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01602.19	Adaptin_N	57	593	1.60E-83

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12400	AP4E1	Lysosome	map04142

Gene Ontology

GO term	Ontology	Name
GO:0015031	Biological Process	protein transport
GO:0016192	Biological Process	vesicle-mediated transport
GO:0006886	Biological Process	intracellular protein transport
GO:0030124	Cellular Component	AP-4 adaptor complex
GO:0030117	Cellular Component	membrane coat

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	62.700
SRP064423	SRR2545915	Juvenile tuber	66.210
SRP108465	SRR5643513	five period of Gastrodia elata	65.990
	SRR5643514	five period of Gastrodia elata	66.970
	SRR5643515	five period of Gastrodia elata	62.540
	SRR5643524	five period of Gastrodia elata	64.240
	SRR5643525	five period of Gastrodia elata	80.810
	SRR5643528	five period of Gastrodia elata	75.340
	SRR5643658	five period of Gastrodia elata	77.540
	SRR5643659	five period of Gastrodia elata	89.770
	SRR5643660	five period of Gastrodia elata	99.690
	SRR5643661	five period of Gastrodia elata	95.130
	SRR5643662	five period of Gastrodia elata	99.920
	SRR5643663	five period of Gastrodia elata	98.180
	SRR5643664	five period of Gastrodia elata	110.370
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	65.130
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	52.790
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	62.230
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	64.400
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	68.320
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	68.490
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	64.420
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	64.870
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	64.500
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	60.720
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	64.780
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	64.780
SRP279888	Gastro	Gastrodia elata tuber	84.39
	Juven	Juvenile tuber	77.45
	Mother_Gastro	Mother tuber of Gastrodia elata	60.22
	Mother_Juven	Mother tuber of Juvenile	54.34