Gene detail

Detail information of GWHGAAEX016483/evm.TU.scaffold_76.63

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|428306334\|ref\|YP_007143159.1\|	5.00E-37	heparan-alpha-glucosaminide N-acetyltransferase [Crinalium epipsammum PCC 9333]
KOG	KOG4683	7.00E-168	Uncharacterized conserved protein
nr	gi\|672117532\|ref\|XP_008781956.1\|	0	PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Phoenix dactylifera]
trEMBL	tr\|J3N764\|J3N764_ORYBR	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB11G16500.1}
TAIR	AT5G27730	7.00E-168	Protein of unknown function (DUF1624)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000077	3671867	3723480	-

Transcript Sequence
>GWHTAAEX016483 ATGGAAAACGAGAAGATAGCAATGGCGGGAGAGAACAGCATCCATGTTACTGTTGGAGCTGAACCTGCCTCTAAAGAGGATAAGGACGAAGGTATTATGGCTAAGGAGGAGCTTAAGGGTTCAGAAGAGGAAGAAATGGTTGAGAAACAGAAGGAAATTGAAGCCGGTAACAAGATGAGGATCGCTTCGGTGGATGCCTTCCGTGGGCTCACTGTGGCTCTAATGATATTGGTAGACCATGCTGGAGGAGAATATGAACAAATGAATCACTCTCCATGGAATGGCTGCACCCTTGCTGATATTGTCATGCCCTTTTTTCTCTTCATTGTGGGGGTGTCAATCGCTCTTGCCTTCAAGAGAATTTCAAGAGCTTCTAATTCAATCAAAAAGATTATCATTAGAACAATCAAACTCATTCTTTGGGGAATTCTGCTTCAGGGTGGCTACTCCCATGCTCCTGATGAGCTCTCCTATGGAGTTAACATGAAGAACATCCGCTGGTGTGGCATTCTTCAGAGAATAGCGCTGGCGTACTTGGTGGTGTCTCTCGTTGAAGTCTTCACTTGCAAGTCCCGTCCAAGGGAAATTGGGTCAAACTTCTTATCCATCTTCAGAGGATATTGTTGGCAATGGGTGGTTGGTTTCATTGCTTTTTCCATCTACATCTGCACAATATTTGGACTTTATGTTCCAGACTGGAGATTTGTTTACCACAAACAGGGAGATATAAATGATGGAAAGGCATTTACGGTCAAATGTGGCAGCAGAGGACAATTAGGTCCTGCTTGCAATGCAGTTGGTTATGTTGATAGAGTAGTTTGGGGTATAAACCATCTGTATCCACGGCCTGCATGGGAACGATCTAAGGCTTGTACCCTTAGTTCTCCAGCCTCTGGACCTCTTCGCAATGATGCTCCATCTTGGTGCCTTGCTCCCTTCGAACCTGAGGGCTTGCTGAGTTCAATACCAGCAATCGTTTCAGCAACTATTGGTATCCATTATGGGCATATTCTGATCCATTATAAGGTTCATTTGGAGAGGCTAAAGCATTGGATGCTGTTGGCTATTGTACTAGTTGTTTGTGGCTTACTTCTTCATTTCACAAATGCCATTCCACTCAATAAGCAACTATACAGCTTCAGCTATGTTTGTTTCACAGCTGGTGCAGCGGGGATCGTTTTATCTGCCTTCTACTTGCTGGTTGATGTGTATGGTTTTAGAAAAACATTTCAAGTCTTTGAATGGATCGGAATGAACGCAATGCTGATATATGTATTGGGAGCGGAAGGAATATTTCCGGCGTTCGTGAACGGCTGGTATTATGGAACTCCAGGAAATACACTAGTGTTTTGGATCAAGCAGCATGTCTTCATCAATGTTTGGAACTACGAGAGTTGGGACTCTTTTATATGTGATCTTTGCTGA

Network for GWHGAAEX016483

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07786.11	DUF1624	60	184	6.20E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10532	HGSNAT	Metabolic pathways	map01100
		Glycosaminoglycan degradation	map00531
		Lysosome	map04142

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	16.080
SRP064423	SRR2545915	Juvenile tuber	21.880
SRP108465	SRR5643513	five period of Gastrodia elata	24.280
	SRR5643514	five period of Gastrodia elata	35.810
	SRR5643515	five period of Gastrodia elata	28.220
	SRR5643524	five period of Gastrodia elata	24.990
	SRR5643525	five period of Gastrodia elata	36.480
	SRR5643528	five period of Gastrodia elata	80.820
	SRR5643658	five period of Gastrodia elata	47.620
	SRR5643659	five period of Gastrodia elata	3.760
	SRR5643660	five period of Gastrodia elata	2.070
	SRR5643661	five period of Gastrodia elata	3.060
	SRR5643662	five period of Gastrodia elata	3.730
	SRR5643663	five period of Gastrodia elata	4.840
	SRR5643664	five period of Gastrodia elata	4.090
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.320
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.750
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.120
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.900
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.300
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.180
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.570
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.080
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.950
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.420
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.160
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.160
SRP279888	Gastro	Gastrodia elata tuber	4.36
	Juven	Juvenile tuber	14.57
	Mother_Gastro	Mother tuber of Gastrodia elata	20.26
	Mother_Juven	Mother tuber of Juvenile	18.97