Detail information of GWHGAAEX017037/evm.TU.scaffold_8.87
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1059 | 0 | Vesicle coat complex AP-3, delta subunit |
| nr | gi|743757453|ref|XP_010922047.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: AP-3 complex subunit delta-like [Elaeis guineensis] |
| Swissprot | tr|Q9C744|AP3D_ARATH | 0 | AP-3 complex subunit delta |
| trEMBL | tr|M1A457|M1A457_SOLTU | 0 | AP-3 complex subunit delta {ECO:0000256|PIRNR:PIRNR037092} |
| TAIR | AT1G48760 | 0 | delta-adaptin |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000004 | 4680813 | 4683933 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017037
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01602.19 | Adaptin_N | 45 | 619 | 4.50E-60 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12396 | AP3D | Lysosome | map04142 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016192 | Biological Process | vesicle-mediated transport |
| GO:0015031 | Biological Process | protein transport |
| GO:0006886 | Biological Process | intracellular protein transport |
| GO:0030123 | Cellular Component | AP-3 adaptor complex |
| GO:0030117 | Cellular Component | membrane coat |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.340 |
| SRR2545915 | Juvenile tuber | 9.490 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.920 |
| SRR5643514 | five period of Gastrodia elata | 8.190 | |
| SRR5643515 | five period of Gastrodia elata | 8.310 | |
| SRR5643524 | five period of Gastrodia elata | 8.340 | |
| SRR5643525 | five period of Gastrodia elata | 6.590 | |
| SRR5643528 | five period of Gastrodia elata | 7.370 | |
| SRR5643658 | five period of Gastrodia elata | 6.960 | |
| SRR5643659 | five period of Gastrodia elata | 11.820 | |
| SRR5643660 | five period of Gastrodia elata | 12.760 | |
| SRR5643661 | five period of Gastrodia elata | 13.410 | |
| SRR5643662 | five period of Gastrodia elata | 13.200 | |
| SRR5643663 | five period of Gastrodia elata | 12.650 | |
| SRR5643664 | five period of Gastrodia elata | 9.830 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.380 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.070 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.310 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.120 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.130 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.800 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.630 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.470 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.260 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.820 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.650 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.650 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.01 |
| Juven | Juvenile tuber | 9.69 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.31 | |
| Mother_Juven | Mother tuber of Juvenile | 12.35 |