Detail information of GWHGAAEX017066/evm.TU.scaffold_8.124
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|116624700|ref|YP_826856.1| | 2.00E-67 | Mn2+/Fe2+ transporter [Candidatus Solibacter usitatus Ellin6076] |
| KOG | KOG1291 | 2.00E-158 | Mn2+ and Fe2+ transporters of the NRAMP family |
| nr | gi|672158907|ref|XP_008799200.1| | 0 | PREDICTED: metal transporter Nramp5-like [Phoenix dactylifera] |
| Swissprot | tr|Q8H4H5|NRAM5_ORYSJ | 0 | Metal transporter Nramp5 |
| trEMBL | tr|W9RMB1|W9RMB1_9ROSA | 0 | Metal transporter Nramp5 {ECO:0000313|EMBL:EXB60116.1} |
| TAIR | AT1G15960 | 2.00E-158 | NRAMP metal ion transporter 6 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000004 | 5727345 | 5729521 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017066
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01566.17 | Nramp | 23 | 310 | 8.20E-86 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K21398 | SLC11A2, DMT1, NRAMP2 | Lysosome | map04142 |
| Ferroptosis | map04216 | ||
| Mineral absorption | map04978 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030001 | Biological Process | metal ion transport |
| GO:0046873 | Molecular Function | metal ion transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.440 |
| SRR2545915 | Juvenile tuber | 5.280 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 31.440 |
| SRR5643514 | five period of Gastrodia elata | 26.390 | |
| SRR5643515 | five period of Gastrodia elata | 22.190 | |
| SRR5643524 | five period of Gastrodia elata | 28.190 | |
| SRR5643525 | five period of Gastrodia elata | 3.430 | |
| SRR5643528 | five period of Gastrodia elata | 0.590 | |
| SRR5643658 | five period of Gastrodia elata | 0.890 | |
| SRR5643659 | five period of Gastrodia elata | 6.180 | |
| SRR5643660 | five period of Gastrodia elata | 3.190 | |
| SRR5643661 | five period of Gastrodia elata | 8.750 | |
| SRR5643662 | five period of Gastrodia elata | 9.880 | |
| SRR5643663 | five period of Gastrodia elata | 4.890 | |
| SRR5643664 | five period of Gastrodia elata | 8.570 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 26.390 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 15.670 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.050 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 30.250 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 21.170 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 28.740 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.860 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 23.340 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 30.430 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 25.050 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 15.360 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 15.360 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 31.56 |
| Juven | Juvenile tuber | 21.87 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 44.19 | |
| Mother_Juven | Mother tuber of Juvenile | 57.05 |