Gene detail information of Glyur000002s00000230.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G14290.18.00E-13620S proteasome alpha subunit E2
NRXP_007211942.19.22E-174hypothetical protein PRUPE_ppa010778mg [Prunus persica]
COGNP_613670.12.00E-69proteasome subunit alpha [Methanopyrus kandleri AV19]
Swissprottr|Q9M4T8|PSA5_SOYBN2.00E-174Proteasome subunit alpha type-5
trEMBLtr|M5WIN7|M5WIN7_PRUPE3.00E-174Proteasome subunit alpha type {ECO:0000256|RuleBase:RU000551}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00002155164159540-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02729PSMA5 EC:3.4.25.1 Proteasome map03050


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process

GO:0051603  proteolysis involved in cellular protein catabolic process


cellular_component

GO:0005839  proteasome core complex

GO:0019773  proteasome core complex, alpha-subunit complex


molecular_function

GO:0004175  endopeptidase activity

GO:0004298  threonine-type endopeptidase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000002s00000230.1PF10584.4Proteasome_A_N8303.50E-14
Glyur000002s00000230.1PF00227.21Proteasome312181.50E-64


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control65.499
SRR1783600control66.443
SRR1783602moderate drought stress52.076
SRR1811619moderate drought stress51.822

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain104.707
DRR006520Root Summer glycyrrhizin high producing strain102.416
DRR006521Root Winter glycyrrhizin high producing strain115.509
DRR006522Root Winter glycyrrhizin high producing strain111.969
DRR006523Root Summer glycyrrhizin low producing strain98.783
DRR006524Root Summer glycyrrhizin low producing strain98.659
DRR006525Leaf Summer glycyrrhizin high producing strain41.625
DRR006526Leaf Summer glycyrrhizin high producing strain42.314

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)160.248
SRR2868004Drought Stress(Tissue:root)129.179
SRR2967015Control (Tissue:root)125.042

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave77.258
SRR9715740Leave80.082
SRR9715741Leave90.013
SRR9715739Root90.612
SRR9715742Root100.480
SRR9715743Root99.008

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h137.763
SRR8749028MeJA induced 9h81.136
SRR8749029MeJA induced 9h108.695
SRR8749030Uninduced42.661
SRR8749031Uninduced30.909
SRR8749032Uninduced48.818

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root135.709
SRR8400027Control-Root118.329

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved