Gene detail information of Glyur000003s00001172.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G42010.10phospholipase D beta 1
NRXP_003520025.10PREDICTED: phospholipase D beta 1-like [Glycine max]
COGYP_003981721.13.00E-31phospholipase D [Achromobacter xylosoxidans A8]
Swissprottr|P93733|PLDB1_ARATH0Phospholipase D beta 1
trEMBLtr|I1JDQ3|I1JDQ3_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G10360.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00003365905374470+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01115PLD1_2 EC:3.1.4.4 Glycerophospholipid metabolism map00564
Ether lipid metabolismmap00565
Ras signaling pathwaymap04014
Phospholipase D signaling pathwaymap04072
Sphingolipid signaling pathwaymap04071
cAMP signaling pathwaymap04024
Endocytosismap04144
Fc gamma R-mediated phagocytosismap04666
GnRH signaling pathwaymap04912
Glutamatergic synapsemap04724
Choline metabolism in cancermap05231


Gene Ontology

molecular_function

GO:0003824  catalytic activity

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000003s00001172.1PF00168.25C23084136.80E-23
Glyur000003s00001172.1PF00614.17PLDc6316661.40E-11
Glyur000003s00001172.1PF00614.17PLDc9679932.20E-07
Glyur000003s00001172.1PF12357.3PLD_C104011109.80E-31


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.942
SRR1783600control2.892
SRR1783602moderate drought stress3.732
SRR1811619moderate drought stress3.681

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.216
DRR006520Root Summer glycyrrhizin high producing strain5.170
DRR006521Root Winter glycyrrhizin high producing strain5.456
DRR006522Root Winter glycyrrhizin high producing strain5.248
DRR006523Root Summer glycyrrhizin low producing strain7.306
DRR006524Root Summer glycyrrhizin low producing strain7.049
DRR006525Leaf Summer glycyrrhizin high producing strain4.656
DRR006526Leaf Summer glycyrrhizin high producing strain4.639

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.412
SRR2868004Drought Stress(Tissue:root)16.364
SRR2967015Control (Tissue:root)13.550

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.854
SRR9715740Leave8.378
SRR9715741Leave8.406
SRR9715739Root1.797
SRR9715742Root6.953
SRR9715743Root6.702

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h4.731
SRR8749028MeJA induced 9h5.272
SRR8749029MeJA induced 9h4.031
SRR8749030Uninduced5.439
SRR8749031Uninduced5.513
SRR8749032Uninduced3.331

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root9.718
SRR8400027Control-Root10.420

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved