Gene detail information of Glyur000008s00001298.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G22630.14.00E-9620S proteasome beta subunit D1
NRNP_001235342.15.74E-128uncharacterized protein LOC100499738 [Glycine max]
COGYP_003669514.18.00E-13Proteasome endopeptidase complex [Staphylothermus hellenicus DSM 12710]
Swissprottr|O23714|PSB2A_ARATH2.00E-121Proteasome subunit beta type-2-A
trEMBLtr|C6SW24|C6SW24_SOYBN2.00E-128Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G44200.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00008325885327067+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02734PSMB2 EC:3.4.25.1 Proteasome map03050


Gene Ontology

biological_process

GO:0051603  proteolysis involved in cellular protein catabolic process


cellular_component

GO:0005839  proteasome core complex


molecular_function

GO:0004298  threonine-type endopeptidase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000008s00001298.1PF00227.21Proteasome31839.50E-37


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.193
SRR1783600control3.166
SRR1783602moderate drought stress3.116
SRR1811619moderate drought stress3.246

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.863
DRR006520Root Summer glycyrrhizin high producing strain3.579
DRR006521Root Winter glycyrrhizin high producing strain2.356
DRR006522Root Winter glycyrrhizin high producing strain2.175
DRR006523Root Summer glycyrrhizin low producing strain14.850
DRR006524Root Summer glycyrrhizin low producing strain14.607
DRR006525Leaf Summer glycyrrhizin high producing strain5.502
DRR006526Leaf Summer glycyrrhizin high producing strain5.522

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)7.308
SRR2868004Drought Stress(Tissue:root)14.406
SRR2967015Control (Tissue:root)6.165

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.933
SRR9715740Leave5.099
SRR9715741Leave3.885
SRR9715739Root1.221
SRR9715742Root2.639
SRR9715743Root2.522

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.065
SRR8749028MeJA induced 9h9.893
SRR8749029MeJA induced 9h6.327
SRR8749030Uninduced3.061
SRR8749031Uninduced2.637
SRR8749032Uninduced4.112

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.137
SRR8400027Control-Root2.094

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved