Gene detail

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Gene detail information of Glyur000021s00002727.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G55180.1	0	phospholipase D alpha 4
NR	XP_003533012.1	0	PREDICTED: phospholipase D epsilon-like isoform X1 [Glycine max]
COG	YP_003981721.1	1.00E-27	phospholipase D [Achromobacter xylosoxidans A8]
Swissprot	tr\|Q9C888\|PLDE1_ARATH	0	Phospholipase D epsilon
trEMBL	tr\|K7L7M9\|K7L7M9_SOYBN	0	Phospholipase D {ECO:0000256\|PIRNR:PIRNR036470}

Sequence

Transcript Sequence

>Glyur000021s00002727.1
ATGGAGGAAACACCTACGCTCCTCCATGGGACAATTGAAGCTACCATCTTCAATGCCTCACCTTACTCACCTATTTTTCCCTTCAGTTGTATATGTACAAATAGAAAGCCTGCTTATGTGACCATCAAGATAGACAACAAGAAGGTTGCAAAAACCAGCCAAGAAAGGAATCATGTTTGGAACCAAACCTTTCAGATTCAATGTGCTCATCCAGCTGATTCAACCATCACCATTACACTGAAAACATCATATTACATATTGGGGAAATACCATATCCAGGCACAACAGCTGTTGAAGGAAGGAAGCTTAATCAATGGATTCTTCCCTCTCCTCATGGAAAATGGAAAACCAAACCCAAAACTTAAATTNAAGTTTATTTTATGGTTCAAGCCAGCAGAATTTGAACCAACTTGGTCAAAGGTACTAACCAATTCAGAATTTCAAGGGCTGAGGGATGCAACATTCCCACAAAGGTCCAACTGTCAGGTCAAACTTTATCATGATGCTCATCATTCTCCTTCTTTCCAACCTCCCTTTGAACCATGTGGAACTCCAAGAAAGCTATGGGAGGATGTCTATAAAGCCATTGAGGGTGCAAAGTATATAGTTAGAGATCCTCATACAGAAATCCANCATGCAAGAGGAATAAAGCTGGGTGAGCTATTGAAGAAGAAGGCAGAGGAAGGAGTGGCTGTGAGGGTAATGCTTTGGGATGATGAAACATCTTTGCCCTTTATTAAGAACAAAGGTGTAATGAACACCCATGATGAGGATNCTCTTGCTTATTTCAAACATACAAAAGTAATATGCAGAAAGTGTCCAAGGTTACACCACAAGTTCCCAACACTATTTGCTCACCATCAGAAGATCATAACAGTGGACACCAAAGCATCAAAATCTGTTACTAGTGACAGAGAACTCATGAGCTTTGTGGGTGGGTTAGATTTGTGCGATGGCCGGTATGACACAGAGCAGCATTCATTGTTCCAAACACTCATTAGGGAATCACATTGTTATGACTTTTACCAAACAAACATTGAAGGAGCTAGCCTCAACAAAGGAGGGCCAAGAGTGCCTTGGCATGATGCTCATGCTTGTGTTACTGGTGAGGCAGCTTGGGATGTGTTAACAAATTTTGAGCAAAGATGGAACAAGCAGTGTGGTACTCCTTCTCTTCTAGTCCCTTCTAGCACCTTGGTAAATCTAATGCCTCAGACAAGCTCAAGCAGCACAGCCATAGAAAGGGATTGGAAAGTTCAAGTATACAGGTCAATTGACCATGCTTCTGTTGGTGATTTGTGTACTAGAAAGTTTAGTGTGGAGAGGAGCATCCATGATGCTTATGTTGAAGCAATTAGGCGTGCTGAGAGGTTTATATACATTGAAAACGAATACTTCATTGGGGGCTGCCAATGGTGGGAGAAAGATAGGCATAGTGGCTGCACAAATCTAATTCCCATTGAGATTGCACTCAAGGTTGTTAGTAAGATCAAAGCAAAGGAGAGGTTTGCAGTGTATATAGTCATAACAATGTGGCCAGAAGGAGTGCCTGAAAGTGAAACAGTTCAAGATATATTGCATTGGACTAGAGAAACAGTGGCAATGATGTATAGGTTGATTGGAGAAGCAATAAAAGAAAGTGGGGAACCAGGACACCCAAGAGACTACTTGAATTTCTTCTGTCTTGCAAACAGGGAGCACAAGGGAAAAGGGGAGTATCTCCCACTAGATTCTCCCCATCCTGAAACACAATACTGGAATGCCCAGAAGAATAGGAGATTCATGGTTTACGTTCATTCCAAGCTCATGATAGTGGACGACCTATACATATTGATAGGTTCAGCTAATGTGAACCAAAGATCCATGGATGGGCAAAGAGACACTGAGATTGCCATAGGATGCTTCCAGTCCCAAGATGAAGCTGACAACCAAATGAAACTTGGTGATATTCATGCATACAGGATGTCACTATGGTATGAGCACACCAATAGTGCTGAGAGATTGTTCATAGAGCCAGAAAGCTTGGAATGTGTGAAGAGGATGCGGTCAATAGGAGATCAAATGTGGGAAATCTACAGCAATGAAGAAATTGTAGACATGGAAGGTGTGCACCTTGTTGCTTACCCTATCAGGGTAACACAAGAAGGGTGTTTGAAGGACCTTACTAATGGAGTNCATTTTCCTGATACAAATTCTCTAGTGAAAGGGAAGAGATCTAAAATGTTGCCTCCGAACTTTACCACTTAGACATACAGTTGAGATACATACATATTGGTGTTCTAATATAAATGGAAGCTTGAAAAACAAAAGCCTTGTAAATAATCTATTTATAGTATATAATTTCTAAAGCACGAATATTAGACCGCCACCTCAGCTTTACTACCACCAAGAACCTATTTCATTTGTTACCTTTTCGACTAAAATGCTGTGTCCATTGTCTATCTATTGTTCAATTACAATATCCATGCCACGCGTGATGCATTGCAACTCGTACGTTTTCAAGAGCCACCAGTTACACAACACTCGTTGCTATACTTCATCATTCTCATTCTATTTGCATCATCCTCTATTCTCTAGGATCCAATTTGAGGTGTGGGCA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00021	342570	346324	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01115	PLD1_2	EC:3.1.4.4	Glycerophospholipid metabolism	map00564
			Ether lipid metabolism	map00565
			Ras signaling pathway	map04014
			Phospholipase D signaling pathway	map04072
			Sphingolipid signaling pathway	map04071
			cAMP signaling pathway	map04024
			Endocytosis	map04144
			Fc gamma R-mediated phagocytosis	map04666
			GnRH signaling pathway	map04912
			Glutamatergic synapse	map04724
			Choline metabolism in cancer	map05231

Gene Ontology

biological_process
GO:0046470 phosphatidylcholine metabolic process

cellular_component GO:0016020 membrane molecular_function GO:0003824 catalytic activity GO:0004630 phospholipase D activity GO:0005509 calcium ion binding GO:0005515 protein binding "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000021s00002727.1	PF00614.17	PLDc	282	320	1.50E-05
Glyur000021s00002727.1	PF00614.17	PLDc	597	620	2.40E-05
Glyur000021s00002727.1	PF12357.3	PLD_C	666	739	1.50E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.147
SRR1783600	control	0.164
SRR1783602	moderate drought stress	0.072
SRR1811619	moderate drought stress	0.073

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.262
DRR006520	Root Summer glycyrrhizin high producing strain	2.084
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.356
DRR006524	Root Summer glycyrrhizin low producing strain	2.354
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.873
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.811

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	4.043
SRR2868004	Drought Stress(Tissue:root)	4.130
SRR2967015	Control (Tissue:root)	3.375

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.198
SRR9715740	Leave	0.655
SRR9715741	Leave	0.686
SRR9715739	Root	0.000
SRR9715742	Root	1.945
SRR9715743	Root	1.670

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.019
SRR8749029	MeJA induced 9h	0.045
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.770
SRR8400027	Control-Root	4.051