Gene detail

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Gene detail information of Glyur000035s00005006.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G12570.1	4.00E-152	ubiquitin protein ligase 5
NR	XP_003529662.1	0	PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X1 [Glycine max]
Swissprot	tr\|Q9SU29\|UPL5_ARATH	0	E3 ubiquitin-protein ligase UPL5
trEMBL	tr\|K7L3Y8\|K7L3Y8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G39546.1}

Sequence

Transcript Sequence

>Glyur000035s00005006.1
ATGTCTATCACCGAAACCCTCATTCATCGGCACTGCGGTGGTGGCGCCACAGCCAAACACGACGCTCACTACTCCTCCAACCGCAATTTCGACGACTACAACAGCTCCTCCGATTACGACGACGACATGGACGACGCTCACGTCTCCAAGCGAAAATTCGACGACTACAGCTCCTCCGACTATGACGACGCCGATTTGCTCGACCTAGTTTCCGTTAAGATGAGGAAGGAAACCGAAACGACGTTGTCGCAGCGTCTTCAGTTCTTCGTCCGCATTGCCGCAAGCAGCAAGAGCCTGGTGATTCAGGCCTCGGAAGAAGAGACGGTTGAATCGGTTCACGAAAGGATCGAGACAATAACNGGAATTCCGGTTCAGTTNCAGCGCCTGACGCANAACCTGAGGCAGCTTAAGCGGAAGCGTAGACTCCGCGAGTGCGGCATTCAGAACGACGCGACTCTTCTACTTGTTTGCCACGCGCCAATTGGAGCGTGCAACGTGGTGTTGAAATCCGTGCAGAAGATGGTTTCGTTGATCAACTCTCTCTGCAGAGGAGAGTGTGAGTGTTTGGTGGAGTACGCTTCGACAATGATCGAGAACCACATGACAAGGCACTTCGACAACCCCGAGTATTACTCCTTCTTCATGTCATTGAAAGCTCCGTTGGCGCTGGTAACGCTCTATGCTTCCCCACACGGAGTTAACNGGGACATTGCCAATTCTGCCATTACGCATTTCTTGAACTGTACACACCCTAACACCTCTAAAGACTTGCAGGTTCATTGCCTTCCCGTGGTGTTGAAGCTTTGCAAGTTGCTTAGAAAGGTGGGGTGTGAGGATACTCTATATCTAGTTTGCAGGGGAACTTTTGGGGTTTTGTTGGCGAATGTTGGTGGGGTTTCACCTATGACTCCCAAACGAATGGCTGTGCTTCAGGGCANTTTCGCCTTTGTCCGTGAGCTTGCTGATAACTTGTTGAGGGATTTGGATTCAAGTATCGATAGCCCCACCTGCGCAGGGCCCCTTTTGCAGGATGTTCAGGATTTCGCGTCGTTCTTGGTCCCTNTTAGGAAAGGAGTCGGAGAGTGGCAAGACTTGAAGGGAATTTGCCGTGAGGAGGAACCCTATGCTGCAGGAATGGTTGAACACATTCGTACTATGTATGTTGAGTTATTGAGCAAAATGGATAAGTGCCTTCACAGCATGGAGGGTTGCTTGGCNGACAAGGAACAAGGGGAAGGGGATGATGAGGATGTTTTTTATTTAGGGTGGTCTCTGTATCTTCCCATCTTGAAGGAANTGTATAAAATCTCCGAGCTCTTTGACAGCGCTGAGTTTTGGAGAGTTTTGGAGTGTCGAAGAAATATGCTGTCTCAATTGGTTGTTCGGTTTGCGGAGAGGAGAAGTAAGNATCATTGGTGGATTCTTGAGCGCCAAAGTGTGACCACTTTTGAGACAAGAAGGCATTTTGCAATGATGTTGTTCCCCGACATGAATGACGACTTTGAGGAGTTTCATGAGATGCTTGTTGACAGGAATCAGCTGTTGGCTGAATCTTTCGAGTACATAGCGGGAGCAGAGGCTGAATCTCTGCAAGGTGGTCTATTTATGGAATTCAAGAATGAGGNTGCCACTGGACCGGCATCTAAGATACATCGTCGGCACCTTGAGTACTTCAGCTTCNCTGGTCGTATTATTGCATTAGCTTTGATGAATAGTGTGCAAGTGGGTATTGTTTTTGATCGTGTGTTTATCATGCAATTGGCTGGAAACGATATTACTTTAGAAGATATTCGGGGTGCGGATCCTTACTTATATAGTAGCTGCAAGCAAATATTGGAGATGGATGCTGATTTCATTGATTCAGATGCATTAGGACTGACATTTGTTCGAGAGGTGGNGGAATTGGGATGCAGGAAAGTGATTGAGCTTTGCCCTGGTGGGGAAAACCTTGTAGTGAGTAGTAAGAACAGGAAGAAGTATGTTGATCTTCTTATACAGAATCGTTTTGTAACATCCATATCTGAGCAGGTGTCACATTTTGCCAAGGGTTTTGCTGATATTATTTCCATGTCAAGGCTGCAAAAGTTCTTTCAAATTTTAGAGCTNGAAGATCTTGATTGGATGTTGCANGGGAGTGACANAGCCATTTCTGTTGAAGATTGGAAGGCACATACTGAGTATAATGGCTATAAAGAGACTGATTGTCAAATATCGTGGTTTTGGGAGATTGTTGGGAGAATGTCAGCAGAACAAAGGAAGGTTCTTCTGTTCTTTTGGACATCTGTGAAATATTTACCAGTTGAAGGTTTCCATGGGTTTGCTTCCCGCCTATGCATTTCCAAAACCATGGGACGAGATGATCACCTGCCCTCATCTCGCACATGCTTTTACCAACTGTGCTTTCCCCCGTATTCATCTATGGCTATCATGCAAGATCGCCTTGGAATCATCACTAAAGAACACATCGGTTGCAGTTTTGGTGCTTATTGAATGGTGAATACACCTGCAATTTGNTAGCAAGTGATTTTGACTGCACATAGAAATACCAGCATTCAGCTTTGTACAAATTTTAGGGTAGGATATTCTTCCATCTGTTCTTGAAATCATAATCTGAGAGGGCTCTTTTCTNAAGTCATTTATCTTCTCTCAAATGTTTTTATGTGGGGTCGAGGATCAATGATGAAGGATAGAAAATTTGACGATATGGGTTCGTCATGCGGTGACATTTAAGTTTG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00035	362254	367129	-

Gene family

Gene family	subfamily
Ubiquitin Family	HECT

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10591	NEDD4, RSP5	EC:2.3.2.26	Ubiquitin mediated proteolysis	map04120
			MAPK signaling pathway - yeast	map04011
			Endocytosis	map04144
			Tight junction	map04530
			Epstein-Barr virus infection	map05169

Gene Ontology

molecular_function

GO:0004842 ubiquitin-protein transferase activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000035s00005006.1	PF00240.18	ubiquitin	96	158	2.90E-11
Glyur000035s00005006.1	PF00632.20	HECT	540	820	1.10E-67

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.633
SRR1783600	control	1.524
SRR1783602	moderate drought stress	0.752
SRR1811619	moderate drought stress	0.832

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.754
DRR006520	Root Summer glycyrrhizin high producing strain	1.711
DRR006521	Root Winter glycyrrhizin high producing strain	1.849
DRR006522	Root Winter glycyrrhizin high producing strain	1.929
DRR006523	Root Summer glycyrrhizin low producing strain	1.190
DRR006524	Root Summer glycyrrhizin low producing strain	1.269
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.882
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.852

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	3.886
SRR2868004	Drought Stress(Tissue:root)	4.535
SRR2967015	Control (Tissue:root)	3.337

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.427
SRR9715740	Leave	0.725
SRR9715741	Leave	1.043
SRR9715739	Root	0.355
SRR9715742	Root	0.870
SRR9715743	Root	1.031

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.583
SRR8749028	MeJA induced 9h	4.156
SRR8749029	MeJA induced 9h	2.204
SRR8749030	Uninduced	0.655
SRR8749031	Uninduced	0.337
SRR8749032	Uninduced	0.316

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.359
SRR8400027	Control-Root	2.901