Gene detail information of Glyur000039s00004188.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G35590.19.00E-131proteasome alpha subunit A1
NRXP_006592586.11.66E-177PREDICTED: proteasome subunit alpha type-6-like [Glycine max]
COGYP_003669599.12.00E-55proteasome endopeptidase complex subunit alpha [Staphylothermus hellenicus DSM 12710]
Swissprottr|O48551|PSA6_SOYBN2.00E-177Proteasome subunit alpha type-6
trEMBLtr|I1LSZ7|I1LSZ7_SOYBN6.00E-178Proteasome subunit alpha type {ECO:0000256|RuleBase:RU000551}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000395816463146-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02730PSMA6 EC:3.4.25.1 Proteasome map03050


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process

GO:0051603  proteolysis involved in cellular protein catabolic process


cellular_component

GO:0005839  proteasome core complex

GO:0019773  proteasome core complex, alpha-subunit complex


molecular_function

GO:0004175  endopeptidase activity

GO:0004298  threonine-type endopeptidase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000039s00004188.1PF10584.4Proteasome_A_N9311.70E-15
Glyur000039s00004188.1PF00227.21Proteasome352203.30E-54


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control49.376
SRR1783600control48.999
SRR1783602moderate drought stress43.839
SRR1811619moderate drought stress43.678

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain74.859
DRR006520Root Summer glycyrrhizin high producing strain75.039
DRR006521Root Winter glycyrrhizin high producing strain130.447
DRR006522Root Winter glycyrrhizin high producing strain125.612
DRR006523Root Summer glycyrrhizin low producing strain47.941
DRR006524Root Summer glycyrrhizin low producing strain47.421
DRR006525Leaf Summer glycyrrhizin high producing strain36.949
DRR006526Leaf Summer glycyrrhizin high producing strain36.443

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)66.821
SRR2868004Drought Stress(Tissue:root)46.496
SRR2967015Control (Tissue:root)47.136

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave44.122
SRR9715740Leave45.193
SRR9715741Leave41.531
SRR9715739Root13.902
SRR9715742Root27.554
SRR9715743Root28.177

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h69.055
SRR8749028MeJA induced 9h40.398
SRR8749029MeJA induced 9h66.881
SRR8749030Uninduced44.086
SRR8749031Uninduced51.742
SRR8749032Uninduced30.936

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root64.996
SRR8400027Control-Root62.115

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved