Gene detail information of Glyur000047s00003961.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G60340.22.00E-119alpha/beta-Hydrolases superfamily protein
NRXP_003517409.10PREDICTED: palmitoyl-protein thioesterase 1-like [Glycine max]
trEMBLtr|K7K4Y8|K7K4Y8_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G41571.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000477785383801-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01074PPT EC:3.1.2.22 Fatty acid metabolism map01212
Fatty acid elongationmap00062
Lysosomemap04142


Gene Ontology

biological_process

GO:0002084  protein depalmitoylation


molecular_function

GO:0008474  palmitoyl-(protein) hydrolase activity

GO:0098599  palmitoyl hydrolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000047s00003961.1PF02089.10Palm_thioest232926.00E-43


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.820
SRR1783600control8.905
SRR1783602moderate drought stress8.067
SRR1811619moderate drought stress8.315

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.806
DRR006520Root Summer glycyrrhizin high producing strain15.499
DRR006521Root Winter glycyrrhizin high producing strain32.372
DRR006522Root Winter glycyrrhizin high producing strain31.855
DRR006523Root Summer glycyrrhizin low producing strain26.954
DRR006524Root Summer glycyrrhizin low producing strain26.802
DRR006525Leaf Summer glycyrrhizin high producing strain17.483
DRR006526Leaf Summer glycyrrhizin high producing strain17.216

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)28.408
SRR2868004Drought Stress(Tissue:root)27.405
SRR2967015Control (Tissue:root)27.356

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave24.513
SRR9715740Leave31.337
SRR9715741Leave33.300
SRR9715739Root4.761
SRR9715742Root11.300
SRR9715743Root10.067

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h42.882
SRR8749028MeJA induced 9h33.520
SRR8749029MeJA induced 9h33.542
SRR8749030Uninduced32.928
SRR8749031Uninduced14.714
SRR8749032Uninduced21.422

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root28.719
SRR8400027Control-Root26.937

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved