Gene detail information of Glyur000047s00003961.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT3G60340.2 | 2.00E-119 | alpha/beta-Hydrolases superfamily protein |
NR | XP_003517409.1 | 0 | PREDICTED: palmitoyl-protein thioesterase 1-like [Glycine max] |
trEMBL | tr|K7K4Y8|K7K4Y8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G41571.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00047 | 77853 | 83801 | - |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K01074 | PPT | EC:3.1.2.22 | Fatty acid metabolism | map01212 |
Fatty acid elongation | map00062 | |||
Lysosome | map04142 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000047s00003961.1 | PF02089.10 | Palm_thioest | 23 | 292 | 6.00E-43 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 8.820 |
SRR1783600 | control | 8.905 |
SRR1783602 | moderate drought stress | 8.067 |
SRR1811619 | moderate drought stress | 8.315 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 15.806 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 15.499 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 32.372 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 31.855 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 26.954 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 26.802 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.483 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.216 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 28.408 |
SRR2868004 | Drought Stress(Tissue:root) | 27.405 |
SRR2967015 | Control (Tissue:root) | 27.356 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 24.513 |
SRR9715740 | Leave | 31.337 |
SRR9715741 | Leave | 33.300 |
SRR9715739 | Root | 4.761 |
SRR9715742 | Root | 11.300 |
SRR9715743 | Root | 10.067 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 42.882 |
SRR8749028 | MeJA induced 9h | 33.520 |
SRR8749029 | MeJA induced 9h | 33.542 |
SRR8749030 | Uninduced | 32.928 |
SRR8749031 | Uninduced | 14.714 |
SRR8749032 | Uninduced | 21.422 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 28.719 |
SRR8400027 | Control-Root | 26.937 |