Gene detail information of Glyur000050s00005709.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G61060.1 | 0 | histone deacetylase 5 |
| NR | XP_003524633.1 | 0 | PREDICTED: histone deacetylase 5-like [Glycine max] |
| COG | YP_004627469.1 | 3.00E-71 | histone deacetylase superfamily [Thermodesulfobacterium geofontis OPF15] |
| Swissprot | tr|Q8RX28|HDA5_ARATH | 0 | Histone deacetylase 5 |
| trEMBL | tr|I1JZJ1|I1JZJ1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G00460.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00050 | 204045 | 213294 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K11407 | HDAC6 | EC:3.5.1.98 | Viral carcinogenesis | map05203 |
| Alcoholism | map05034 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000050s00005709.1 | PF00850.14 | Hist_deacetyl | 287 | 593 | 3.10E-96 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.533 |
| SRR1783600 | control | 15.618 |
| SRR1783602 | moderate drought stress | 11.622 |
| SRR1811619 | moderate drought stress | 11.771 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.670 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.116 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.328 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.074 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.372 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.663 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.960 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.584 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 35.263 |
| SRR2868004 | Drought Stress(Tissue:root) | 34.756 |
| SRR2967015 | Control (Tissue:root) | 35.268 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 22.648 |
| SRR9715740 | Leave | 21.278 |
| SRR9715741 | Leave | 27.237 |
| SRR9715739 | Root | 8.457 |
| SRR9715742 | Root | 18.947 |
| SRR9715743 | Root | 15.944 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.489 |
| SRR8749028 | MeJA induced 9h | 19.104 |
| SRR8749029 | MeJA induced 9h | 15.575 |
| SRR8749030 | Uninduced | 10.810 |
| SRR8749031 | Uninduced | 9.733 |
| SRR8749032 | Uninduced | 7.499 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 29.243 |
| SRR8400027 | Control-Root | 29.276 |