Gene detail information of Glyur000051s00003384.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G22630.18.00E-10620S proteasome beta subunit D1
NRNP_001235342.16.27E-147uncharacterized protein LOC100499738 [Glycine max]
COGYP_004289547.16.00E-14proteasome endopeptidase complex subunit beta [Methanobacterium sp. AL-21]
Swissprottr|O23714|PSB2A_ARATH3.00E-134Proteasome subunit beta type-2-A
trEMBLtr|C6SW24|C6SW24_SOYBN2.00E-147Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G44200.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000512954031955+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02734PSMB2 EC:3.4.25.1 Proteasome map03050


Gene Ontology

biological_process

GO:0051603  proteolysis involved in cellular protein catabolic process


cellular_component

GO:0005839  proteasome core complex


molecular_function

GO:0004298  threonine-type endopeptidase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000051s00003384.1PF00227.21Proteasome31823.00E-39


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control163.533
SRR1783600control170.937
SRR1783602moderate drought stress130.218
SRR1811619moderate drought stress130.965

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain120.550
DRR006520Root Summer glycyrrhizin high producing strain120.421
DRR006521Root Winter glycyrrhizin high producing strain127.545
DRR006522Root Winter glycyrrhizin high producing strain124.789
DRR006523Root Summer glycyrrhizin low producing strain91.115
DRR006524Root Summer glycyrrhizin low producing strain89.473
DRR006525Leaf Summer glycyrrhizin high producing strain75.903
DRR006526Leaf Summer glycyrrhizin high producing strain75.728

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)172.567
SRR2868004Drought Stress(Tissue:root)142.160
SRR2967015Control (Tissue:root)124.173

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave101.647
SRR9715740Leave100.623
SRR9715741Leave100.451
SRR9715739Root110.222
SRR9715742Root98.566
SRR9715743Root103.661

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h163.008
SRR8749028MeJA induced 9h90.754
SRR8749029MeJA induced 9h135.935
SRR8749030Uninduced78.970
SRR8749031Uninduced51.121
SRR8749032Uninduced84.390

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root162.663
SRR8400027Control-Root154.296

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved