Gene detail information of Glyur000059s00006280.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G35310.10calmodulin-domain protein kinase 5
NRABY55551.10calcium-dependent protein kinase [Swainsona canescens]
COGYP_642814.17.00E-28serine/threonine protein kinase [Rubrobacter xylanophilus DSM 9941]
Swissprottr|A5A7I7|CDPK4_SOLTU0Calcium-dependent protein kinase 4
trEMBLtr|B0FC97|B0FC97_9FABA0Calcium-dependent protein kinase {ECO:0000313|EMBL:ABY55551.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000595958869104+


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:4.2.1


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13412CPK EC:2.7.11.1 Plant-pathogen interaction map04626
Toxoplasmosismap05145


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005509  calcium ion binding

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000059s00006280.1PF00069.20Pkinase923506.90E-69
Glyur000059s00006280.1PF13499.1EF-hand_73984578.30E-13
Glyur000059s00006280.1PF13499.1EF-hand_74735284.00E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control44.353
SRR1783600control44.593
SRR1783602moderate drought stress36.402
SRR1811619moderate drought stress35.834

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain52.448
DRR006520Root Summer glycyrrhizin high producing strain51.563
DRR006521Root Winter glycyrrhizin high producing strain84.286
DRR006522Root Winter glycyrrhizin high producing strain82.846
DRR006523Root Summer glycyrrhizin low producing strain86.778
DRR006524Root Summer glycyrrhizin low producing strain86.518
DRR006525Leaf Summer glycyrrhizin high producing strain34.023
DRR006526Leaf Summer glycyrrhizin high producing strain33.567

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)91.643
SRR2868004Drought Stress(Tissue:root)101.564
SRR2967015Control (Tissue:root)88.431

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave93.543
SRR9715740Leave71.082
SRR9715741Leave121.295
SRR9715739Root25.860
SRR9715742Root62.571
SRR9715743Root57.038

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h62.213
SRR8749028MeJA induced 9h83.757
SRR8749029MeJA induced 9h79.686
SRR8749030Uninduced67.914
SRR8749031Uninduced145.180
SRR8749032Uninduced84.278

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root64.461
SRR8400027Control-Root69.631

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved