Gene detail information of Glyur000069s00004050.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G54690.12.00E-44gamma histone variant H2AX
NRKHN04029.19.38E-82Histone H2AX [Glycine soja]
COGYP_008089142.11.00E-10Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chthonomonas calidirosea T49]
Swissprottr|O65759|H2AX_CICAR6.00E-78Histone H2AX
trEMBLtr|V7BM87|V7BM87_PHAVU1.00E-81Histone H2A {ECO:0000256|RuleBase:RU003556}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00069150785152968-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K06067HDAC1_2 EC:3.5.1.98 Notch signaling pathway map04330
Cell cyclemap04110
Thyroid hormone signaling pathwaymap04919
Longevity regulating pathway - multiple speciesmap04213
Pathways in cancermap05200
Transcriptional misregulation in cancersmap05202
Viral carcinogenesismap05203
Chronic myeloid leukemiamap05220
Huntington's diseasemap05016
Alcoholismmap05034
Epstein-Barr virus infectionmap05169


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000069s00004050.2PF00850.14Hist_deacetyl881685.50E-28


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control32.157
SRR1783600control32.836
SRR1783602moderate drought stress18.081
SRR1811619moderate drought stress17.862

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain70.855
DRR006520Root Summer glycyrrhizin high producing strain70.062
DRR006521Root Winter glycyrrhizin high producing strain67.021
DRR006522Root Winter glycyrrhizin high producing strain65.808
DRR006523Root Summer glycyrrhizin low producing strain67.836
DRR006524Root Summer glycyrrhizin low producing strain67.631
DRR006525Leaf Summer glycyrrhizin high producing strain21.868
DRR006526Leaf Summer glycyrrhizin high producing strain23.557

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)236.586
SRR2868004Drought Stress(Tissue:root)166.026
SRR2967015Control (Tissue:root)131.944

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave92.456
SRR9715740Leave58.451
SRR9715741Leave66.884
SRR9715739Root122.351
SRR9715742Root91.047
SRR9715743Root98.766

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h246.171
SRR8749028MeJA induced 9h146.071
SRR8749029MeJA induced 9h202.814
SRR8749030Uninduced67.356
SRR8749031Uninduced61.391
SRR8749032Uninduced82.009

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root177.655
SRR8400027Control-Root143.380

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved