Gene detail information of Glyur000082s00007598.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G16144.10associated molecule with the SH3 domain of STAM 3
NRXP_007154346.10hypothetical protein PHAVU_003G111000g [Phaseolus vulgaris]
COGYP_008797954.14.00E-0826S proteasome regulatory subunit N11-like protein [Candidatus Caldiarchaeum subterraneum]
Swissprottr|Q5PNU3|AMSH3_ARATH0AMSH-like ubiquitin thioesterase 3
trEMBLtr|V7CAP2|V7CAP2_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW26340.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00082257038263513+


Gene family

Gene familysubfamily
Ubiquitin FamilyJAMM


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11866STAMBP, AMSH EC:3.4.19.12 Endocytosis map04144


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000082s00007598.1PF08969.6USP8_dimer41002.20E-09
Glyur000082s00007598.1PF01398.16JAB3214284.50E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control23.229
SRR1783600control23.107
SRR1783602moderate drought stress25.791
SRR1811619moderate drought stress25.728

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain23.672
DRR006520Root Summer glycyrrhizin high producing strain23.095
DRR006521Root Winter glycyrrhizin high producing strain28.483
DRR006522Root Winter glycyrrhizin high producing strain27.613
DRR006523Root Summer glycyrrhizin low producing strain19.856
DRR006524Root Summer glycyrrhizin low producing strain19.536
DRR006525Leaf Summer glycyrrhizin high producing strain11.904
DRR006526Leaf Summer glycyrrhizin high producing strain11.977

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)22.902
SRR2868004Drought Stress(Tissue:root)31.435
SRR2967015Control (Tissue:root)22.025

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.872
SRR9715740Leave15.444
SRR9715741Leave17.274
SRR9715739Root5.901
SRR9715742Root13.185
SRR9715743Root11.667

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h18.857
SRR8749028MeJA induced 9h24.126
SRR8749029MeJA induced 9h17.862
SRR8749030Uninduced27.611
SRR8749031Uninduced24.228
SRR8749032Uninduced16.620

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root23.732
SRR8400027Control-Root21.724

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved