Gene detail information of Glyur000101s00010314.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G31300.32.00E-111N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
NRXP_003522675.11.97E-163PREDICTED: proteasome subunit beta type-6 [Glycine max]
COGYP_005842405.12.00E-32proteasome subunit Beta [Fervidicoccus fontis Kam940]
Swissprottr|Q8LD27|PSB6_ARATH4.00E-146Proteasome subunit beta type-6 (Precursor)
trEMBLtr|T2DNM6|T2DNM6_PHAVU1.00E-163Proteasome subunit beta type {ECO:0000256|RuleBase:RU004203}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00101161443165194+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02738PSMB6 EC:3.4.25.1 Proteasome map03050


Gene Ontology

biological_process

GO:0051603  proteolysis involved in cellular protein catabolic process


cellular_component

GO:0005839  proteasome core complex


molecular_function

GO:0004175  endopeptidase activity

GO:0004298  threonine-type endopeptidase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000101s00010314.1PF00227.21Proteasome131932.10E-44


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control63.989
SRR1783600control66.582
SRR1783602moderate drought stress46.593
SRR1811619moderate drought stress47.636

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain94.025
DRR006520Root Summer glycyrrhizin high producing strain95.864
DRR006521Root Winter glycyrrhizin high producing strain101.765
DRR006522Root Winter glycyrrhizin high producing strain97.721
DRR006523Root Summer glycyrrhizin low producing strain61.248
DRR006524Root Summer glycyrrhizin low producing strain59.317
DRR006525Leaf Summer glycyrrhizin high producing strain56.993
DRR006526Leaf Summer glycyrrhizin high producing strain54.499

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)168.559
SRR2868004Drought Stress(Tissue:root)133.263
SRR2967015Control (Tissue:root)122.019

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave105.825
SRR9715740Leave96.268
SRR9715741Leave107.519
SRR9715739Root159.144
SRR9715742Root113.609
SRR9715743Root123.260

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h191.677
SRR8749028MeJA induced 9h119.943
SRR8749029MeJA induced 9h150.236
SRR8749030Uninduced59.484
SRR8749031Uninduced37.786
SRR8749032Uninduced58.422

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root141.974
SRR8400027Control-Root136.180

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved