Gene detail information of Glyur000110s00011773.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G19450.2 | 2.00E-18 | calcium-dependent protein kinase 19 |
| NR | KEH41585.1 | 4.09E-22 | calmodulin-domain kinase CDPK protein [Medicago truncatula] |
| Swissprot | tr|Q42438|CDPK8_ARATH | 2.00E-20 | Calcium-dependent protein kinase 8 |
| trEMBL | tr|A0A072VTY6|A0A072VTY6_MEDTR | 2.00E-22 | Calmodulin-domain kinase CDPK protein {ECO:0000313|EMBL:KEH41585.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00110 | 172503 | 176802 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13412 | CPK | EC:2.7.11.1 | Plant-pathogen interaction | map04626 |
| Toxoplasmosis | map05145 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.456 |
| SRR1783600 | control | 0.383 |
| SRR1783602 | moderate drought stress | 0.506 |
| SRR1811619 | moderate drought stress | 0.369 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.424 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.282 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.207 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.316 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.128 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.260 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.495 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.341 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.905 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.353 |
| SRR2967015 | Control (Tissue:root) | 0.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.590 |
| SRR9715740 | Leave | 0.290 |
| SRR9715741 | Leave | 0.288 |
| SRR9715739 | Root | 0.034 |
| SRR9715742 | Root | 0.015 |
| SRR9715743 | Root | 0.289 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.890 |
| SRR8749028 | MeJA induced 9h | 0.526 |
| SRR8749029 | MeJA induced 9h | 0.402 |
| SRR8749030 | Uninduced | 0.122 |
| SRR8749031 | Uninduced | 0.469 |
| SRR8749032 | Uninduced | 0.501 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.513 |
| SRR8400027 | Control-Root | 1.297 |