Gene detail information of Glyur000115s00008220.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G72990.10beta-galactosidase 17
NRXP_004486833.10PREDICTED: beta-galactosidase 17-like [Cicer arietinum]
COGYP_004643630.13.00E-140beta-galactosidase [Paenibacillus mucilaginosus KNP414]
Swissprottr|Q93Z24|BGA17_ARATH0Beta-galactosidase 17 (Precursor)
trEMBLtr|I1M5B6|I1M5B6_SOYBN0Beta-galactosidase {ECO:0000256|RuleBase:RU000675}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001151561022425-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH35


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12309GLB1, ELNR1 EC:3.2.1.23 Galactose metabolism map00052
Sphingolipid metabolismmap00600
Glycosaminoglycan degradationmap00531
Glycosphingolipid biosynthesis - ganglio seriesmap00604
Other glycan degradationmap00511
Lysosomemap04142


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0004565  beta-galactosidase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000115s00008220.1PF01301.14Glyco_hydro_35764011.30E-113


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control30.746
SRR1783600control30.438
SRR1783602moderate drought stress37.283
SRR1811619moderate drought stress37.242

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain46.033
DRR006520Root Summer glycyrrhizin high producing strain45.965
DRR006521Root Winter glycyrrhizin high producing strain31.387
DRR006522Root Winter glycyrrhizin high producing strain30.645
DRR006523Root Summer glycyrrhizin low producing strain46.227
DRR006524Root Summer glycyrrhizin low producing strain46.032
DRR006525Leaf Summer glycyrrhizin high producing strain15.536
DRR006526Leaf Summer glycyrrhizin high producing strain15.493

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)41.122
SRR2868004Drought Stress(Tissue:root)41.845
SRR2967015Control (Tissue:root)39.097

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.832
SRR9715740Leave13.556
SRR9715741Leave17.961
SRR9715739Root10.109
SRR9715742Root26.221
SRR9715743Root23.764

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h20.654
SRR8749028MeJA induced 9h34.881
SRR8749029MeJA induced 9h20.363
SRR8749030Uninduced23.784
SRR8749031Uninduced13.644
SRR8749032Uninduced18.671

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root42.193
SRR8400027Control-Root39.286

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved