Gene detail information of Glyur000143s00011198.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G23650.10calcium-dependent protein kinase 6
NRXP_003517491.20PREDICTED: calcium-dependent protein kinase 3-like [Glycine max]
COGYP_642814.14.00E-26serine/threonine protein kinase [Rubrobacter xylanophilus DSM 9941]
Swissprottr|Q42479|CDPK3_ARATH0Calcium-dependent protein kinase 3
trEMBLtr|K7K597|K7K597_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G43241.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001439548399940+


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:4.2.1


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13412CPK EC:2.7.11.1 Plant-pathogen interaction map04626
Toxoplasmosismap05145


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005509  calcium ion binding

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000143s00011198.1PF00069.20Pkinase653229.00E-68
Glyur000143s00011198.1PF13499.1EF-hand_73694282.40E-13
Glyur000143s00011198.1PF13499.1EF-hand_74415003.30E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control43.345
SRR1783600control43.513
SRR1783602moderate drought stress50.258
SRR1811619moderate drought stress50.257

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain31.466
DRR006520Root Summer glycyrrhizin high producing strain31.144
DRR006521Root Winter glycyrrhizin high producing strain24.523
DRR006522Root Winter glycyrrhizin high producing strain23.619
DRR006523Root Summer glycyrrhizin low producing strain42.316
DRR006524Root Summer glycyrrhizin low producing strain41.777
DRR006525Leaf Summer glycyrrhizin high producing strain21.698
DRR006526Leaf Summer glycyrrhizin high producing strain21.645

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)62.600
SRR2868004Drought Stress(Tissue:root)80.919
SRR2967015Control (Tissue:root)72.061

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave31.986
SRR9715740Leave26.654
SRR9715741Leave44.163
SRR9715739Root7.654
SRR9715742Root31.997
SRR9715743Root28.356

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h43.693
SRR8749028MeJA induced 9h45.090
SRR8749029MeJA induced 9h35.422
SRR8749030Uninduced50.795
SRR8749031Uninduced48.102
SRR8749032Uninduced27.647

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root57.133
SRR8400027Control-Root60.644

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved