Gene detail information of Glyur000149s00009550.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G47900.1 | 2.00E-97 | Protein of unknown function (DUF1624) |
| NR | XP_004495925.1 | 0 | PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like isoform X2 [Cicer arietinum] |
| COG | YP_007143159.1 | 3.00E-33 | heparan-alpha-glucosaminide N-acetyltransferase [Crinalium epipsammum PCC 9333] |
| trEMBL | tr|V7BJG6|V7BJG6_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW17165.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00149 | 46191 | 54798 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10532 | HGSNAT | EC:2.3.1.78 | Glycosaminoglycan degradation | map00531 |
| Lysosome | map04142 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000149s00009550.1 | PF07786.7 | DUF1624 | 58 | 193 | 1.70E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.075 |
| SRR1783600 | control | 9.956 |
| SRR1783602 | moderate drought stress | 13.057 |
| SRR1811619 | moderate drought stress | 12.764 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.973 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.933 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.913 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.568 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.750 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.794 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.721 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.560 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.539 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.351 |
| SRR2967015 | Control (Tissue:root) | 8.271 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.565 |
| SRR9715740 | Leave | 6.577 |
| SRR9715741 | Leave | 7.346 |
| SRR9715739 | Root | 5.282 |
| SRR9715742 | Root | 7.200 |
| SRR9715743 | Root | 6.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.679 |
| SRR8749028 | MeJA induced 9h | 7.257 |
| SRR8749029 | MeJA induced 9h | 5.584 |
| SRR8749030 | Uninduced | 6.761 |
| SRR8749031 | Uninduced | 6.375 |
| SRR8749032 | Uninduced | 6.405 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 9.704 |
| SRR8400027 | Control-Root | 9.740 |