Gene detail information of Glyur000150s00014578.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G22110.11.00E-12820S proteasome alpha subunit C1
NRAFK33803.10unknown [Medicago truncatula]
COGNP_126298.15.00E-66proteasome subunit alpha [Pyrococcus abyssi GE5]
Swissprottr|O81148|PSA4A_ARATH3.00E-173Proteasome subunit alpha type-4-A
trEMBLtr|I3S0L1|I3S0L1_MEDTR0Proteasome subunit alpha type {ECO:0000256|RuleBase:RU000551}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00150180174180926-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02728PSMA4 EC:3.4.25.1 Proteasome map03050


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process

GO:0051603  proteolysis involved in cellular protein catabolic process


cellular_component

GO:0005839  proteasome core complex

GO:0019773  proteasome core complex, alpha-subunit complex


molecular_function

GO:0004175  endopeptidase activity

GO:0004298  threonine-type endopeptidase activity

"

Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000150s00014578.1PF10584.4Proteasome_A_N5271.70E-14
Glyur000150s00014578.1PF00227.21Proteasome302141.20E-62


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control32.660
SRR1783600control33.499
SRR1783602moderate drought stress31.028
SRR1811619moderate drought stress30.943

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain80.889
DRR006520Root Summer glycyrrhizin high producing strain80.641
DRR006521Root Winter glycyrrhizin high producing strain48.873
DRR006522Root Winter glycyrrhizin high producing strain48.622
DRR006523Root Summer glycyrrhizin low producing strain80.124
DRR006524Root Summer glycyrrhizin low producing strain77.414
DRR006525Leaf Summer glycyrrhizin high producing strain41.696
DRR006526Leaf Summer glycyrrhizin high producing strain40.465

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)128.307
SRR2868004Drought Stress(Tissue:root)103.986
SRR2967015Control (Tissue:root)95.648

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave61.529
SRR9715740Leave68.750
SRR9715741Leave62.102
SRR9715739Root84.164
SRR9715742Root72.054
SRR9715743Root74.422

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h160.748
SRR8749028MeJA induced 9h82.821
SRR8749029MeJA induced 9h117.448
SRR8749030Uninduced43.512
SRR8749031Uninduced19.073
SRR8749032Uninduced34.458

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root98.231
SRR8400027Control-Root86.808

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved