Gene detail information of Glyur000170s00011011.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G10660.10calmodulin-domain protein kinase cdpk isoform 2
NRXP_003520722.20PREDICTED: calcium-dependent protein kinase 2-like [Glycine max]
COGYP_004904866.16.00E-19putative serine/threonine protein kinase [Kitasatospora setae KM-6054]
Swissprottr|Q38870|CDPK2_ARATH0Calcium-dependent protein kinase 2
trEMBLtr|K7KG55|K7KG55_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G36240.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00170142051146381-


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:4.2.1


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13412CPK EC:2.7.11.1 Plant-pathogen interaction map04626
Toxoplasmosismap05145


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005509  calcium ion binding

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000170s00011011.1PF00069.20Pkinase1433851.20E-50
Glyur000170s00011011.1PF13499.1EF-hand_74334922.00E-09
Glyur000170s00011011.1PF13499.1EF-hand_75075578.10E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.426
SRR1783600control0.422
SRR1783602moderate drought stress0.148
SRR1811619moderate drought stress0.127

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.618
DRR006520Root Summer glycyrrhizin high producing strain2.580
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain4.886
DRR006524Root Summer glycyrrhizin low producing strain4.624
DRR006525Leaf Summer glycyrrhizin high producing strain0.162
DRR006526Leaf Summer glycyrrhizin high producing strain0.161

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.484
SRR2868004Drought Stress(Tissue:root)6.147
SRR2967015Control (Tissue:root)1.622

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.726
SRR9715740Leave7.851
SRR9715741Leave7.968
SRR9715739Root1.568
SRR9715742Root3.569
SRR9715743Root3.360

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.391
SRR8749028MeJA induced 9h10.706
SRR8749029MeJA induced 9h8.331
SRR8749030Uninduced71.106
SRR8749031Uninduced29.947
SRR8749032Uninduced6.722

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.338
SRR8400027Control-Root2.629

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved