Gene detail information of Glyur000181s00013105.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G44680.10histone deacetylase 9
NRXP_004506146.10PREDICTED: histone deacetylase 9-like [Cicer arietinum]
COGYP_006720706.18.00E-66histone deacetylase family protein [Geobacter metallireducens GS-15]
Swissprottr|Q8H0W2|HDA9_ARATH0Histone deacetylase 9
trEMBLtr|G7JKX4|G7JKX4_MEDTR0Histone deacetylase {ECO:0000256|PIRNR:PIRNR037913}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00181212092218317+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K06067HDAC1_2 EC:3.5.1.98 Notch signaling pathway map04330
Cell cyclemap04110
Thyroid hormone signaling pathwaymap04919
Longevity regulating pathway - multiple speciesmap04213
Pathways in cancermap05200
Transcriptional misregulation in cancersmap05202
Viral carcinogenesismap05203
Chronic myeloid leukemiamap05220
Huntington's diseasemap05016
Alcoholismmap05034
Epstein-Barr virus infectionmap05169


Gene Ontology

biological_process

GO:0016575  histone deacetylation


molecular_function

GO:0004407  histone deacetylase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000181s00013105.2PF00850.14Hist_deacetyl203161.60E-80


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.255
SRR1783600control18.100
SRR1783602moderate drought stress21.822
SRR1811619moderate drought stress21.860

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain27.977
DRR006520Root Summer glycyrrhizin high producing strain28.134
DRR006521Root Winter glycyrrhizin high producing strain36.230
DRR006522Root Winter glycyrrhizin high producing strain33.940
DRR006523Root Summer glycyrrhizin low producing strain37.612
DRR006524Root Summer glycyrrhizin low producing strain37.679
DRR006525Leaf Summer glycyrrhizin high producing strain22.581
DRR006526Leaf Summer glycyrrhizin high producing strain21.494

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)42.857
SRR2868004Drought Stress(Tissue:root)42.042
SRR2967015Control (Tissue:root)44.543

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave33.146
SRR9715740Leave41.852
SRR9715741Leave38.343
SRR9715739Root7.576
SRR9715742Root19.007
SRR9715743Root16.764

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h67.556
SRR8749028MeJA induced 9h49.054
SRR8749029MeJA induced 9h57.568
SRR8749030Uninduced48.375
SRR8749031Uninduced52.503
SRR8749032Uninduced61.829

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root33.864
SRR8400027Control-Root34.300

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved