Gene detail information of Glyur000195s00012840.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G42010.10phospholipase D beta 1
NRXP_003517450.10PREDICTED: phospholipase D beta 1-like isoform 1 [Glycine max]
COGYP_003981721.13.00E-39phospholipase D [Achromobacter xylosoxidans A8]
Swissprottr|P93733|PLDB1_ARATH0Phospholipase D beta 1
trEMBLtr|I1JA23|I1JA23_SOYBN0Phospholipase D {ECO:0000256|PIRNR:PIRNR036470}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold001955874664776+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01115PLD1_2 EC:3.1.4.4 Glycerophospholipid metabolism map00564
Ether lipid metabolismmap00565
Ras signaling pathwaymap04014
Phospholipase D signaling pathwaymap04072
Sphingolipid signaling pathwaymap04071
cAMP signaling pathwaymap04024
Endocytosismap04144
Fc gamma R-mediated phagocytosismap04666
GnRH signaling pathwaymap04912
Glutamatergic synapsemap04724
Choline metabolism in cancermap05231


Gene Ontology

biological_process

GO:0046470  phosphatidylcholine metabolic process


cellular_component

GO:0016020  membrane


molecular_function

GO:0003824  catalytic activity

GO:0004630  phospholipase D activity

GO:0005509  calcium ion binding

GO:0005515  protein binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000195s00012840.1PF00168.25C2421408.40E-22
Glyur000195s00012840.1PF00614.17PLDc3593948.30E-10
Glyur000195s00012840.1PF00614.17PLDc7097353.60E-08
Glyur000195s00012840.1PF12357.3PLD_C7888602.80E-30


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.424
SRR1783600control2.573
SRR1783602moderate drought stress1.175
SRR1811619moderate drought stress1.153

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.537
DRR006520Root Summer glycyrrhizin high producing strain1.519
DRR006521Root Winter glycyrrhizin high producing strain1.691
DRR006522Root Winter glycyrrhizin high producing strain1.774
DRR006523Root Summer glycyrrhizin low producing strain1.209
DRR006524Root Summer glycyrrhizin low producing strain1.250
DRR006525Leaf Summer glycyrrhizin high producing strain2.897
DRR006526Leaf Summer glycyrrhizin high producing strain3.057

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.590
SRR2868004Drought Stress(Tissue:root)15.179
SRR2967015Control (Tissue:root)14.428

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.103
SRR9715740Leave3.456
SRR9715741Leave11.611
SRR9715739Root0.429
SRR9715742Root3.201
SRR9715743Root2.624

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h4.004
SRR8749028MeJA induced 9h9.815
SRR8749029MeJA induced 9h4.703
SRR8749030Uninduced15.406
SRR8749031Uninduced19.971
SRR8749032Uninduced8.557

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.583
SRR8400027Control-Root4.111

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved