Gene detail information of Glyur000201s00012381.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G48790.1 | 6.00E-177 | associated molecule with the SH3 domain of STAM 1 |
| NR | XP_003525234.1 | 0 | PREDICTED: AMSH-like ubiquitin thioesterase 1-like [Glycine max] |
| COG | YP_008797954.1 | 2.00E-07 | 26S proteasome regulatory subunit N11-like protein [Candidatus Caldiarchaeum subterraneum] |
| Swissprot | tr|Q8VYB5|AMSH1_ARATH | 0 | AMSH-like ubiquitin thioesterase 1 |
| trEMBL | tr|I1K5M0|I1K5M0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G34700.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00201 | 175686 | 182054 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | JAMM |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K11866 | STAMBP, AMSH | EC:3.4.19.12 | Endocytosis | map04144 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000201s00012381.1 | PF08969.6 | USP8_dimer | 10 | 98 | 3.50E-11 |
| Glyur000201s00012381.1 | PF01398.16 | JAB | 335 | 441 | 4.10E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.156 |
| SRR1783600 | control | 10.121 |
| SRR1783602 | moderate drought stress | 7.094 |
| SRR1811619 | moderate drought stress | 7.124 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.417 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.204 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.170 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.081 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.492 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.230 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.359 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.267 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 17.077 |
| SRR2868004 | Drought Stress(Tissue:root) | 19.519 |
| SRR2967015 | Control (Tissue:root) | 21.129 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.868 |
| SRR9715740 | Leave | 5.885 |
| SRR9715741 | Leave | 7.980 |
| SRR9715739 | Root | 0.632 |
| SRR9715742 | Root | 3.794 |
| SRR9715743 | Root | 3.385 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 22.414 |
| SRR8749028 | MeJA induced 9h | 23.701 |
| SRR8749029 | MeJA induced 9h | 22.898 |
| SRR8749030 | Uninduced | 33.057 |
| SRR8749031 | Uninduced | 35.389 |
| SRR8749032 | Uninduced | 18.192 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 11.783 |
| SRR8400027 | Control-Root | 9.598 |