Gene detail information of Glyur000209s00013482.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G54940.2 | 7.00E-148 | Papain family cysteine protease |
| NR | XP_004496226.1 | 0 | PREDICTED: cysteine proteinase 15A-like [Cicer arietinum] |
| COG | YP_504536.1 | 2.00E-28 | peptidase C1A, papain [Methanospirillum hungatei JF-1] |
| Swissprot | tr|P43295|A494_ARATH | 7.00E-143 | Probable cysteine proteinase A494 (Precursor) |
| trEMBL | tr|A0A072VPA6|A0A072VPA6_MEDTR | 0 | Papain family cysteine protease {ECO:0000313|EMBL:KEH43476.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00209 | 211656 | 215133 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01373 | CTSF | EC:3.4.22.41 | Lysosome | map04142 |
| Apoptosis | map04210 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000209s00013482.1 | PF08246.7 | Inhibitor_I29 | 58 | 114 | 5.40E-12 |
| Glyur000209s00013482.1 | PF00112.18 | Peptidase_C1 | 143 | 367 | 4.90E-74 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.025 |
| SRR1783600 | control | 0.025 |
| SRR1783602 | moderate drought stress | 0.026 |
| SRR1811619 | moderate drought stress | 0.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.146 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.142 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.115 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.853 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.957 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.866 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.251 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.068 |
| SRR2967015 | Control (Tissue:root) | 0.104 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.091 |
| SRR9715740 | Leave | 0.043 |
| SRR9715741 | Leave | 0.044 |
| SRR9715739 | Root | 0.099 |
| SRR9715742 | Root | 0.166 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.434 |
| SRR8749028 | MeJA induced 9h | 0.174 |
| SRR8749029 | MeJA induced 9h | 0.206 |
| SRR8749030 | Uninduced | 0.179 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.036 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.326 |
| SRR8400027 | Control-Root | 0.270 |