Gene detail

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Gene detail information of Glyur000219s00011555.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G55180.1	0	phospholipase D alpha 4
NR	XP_004486818.1	0	PREDICTED: phospholipase D epsilon-like [Cicer arietinum]
COG	YP_005373295.1	3.00E-16	phospholipase D [Corallococcus coralloides DSM 2259]
Swissprot	tr\|Q9C888\|PLDE1_ARATH	0	Phospholipase D epsilon
trEMBL	tr\|A2Q468\|A2Q468_MEDTR	0	Phospholipase D {ECO:0000256\|PIRNR:PIRNR036470}

Sequence

Transcript Sequence

>Glyur000219s00011555.1
GATACATATGGCAATGGAGAAAAAGCCTAATAAGCTCATCCACGGAACAATTGAAGCTACCATCTTCAATGCAACACCTTACTCNCCTTCATTTCCCTTCAATTGTTTATGTCCCAATGGAAAGCCTGCTTATGTGACAATCAAGATAGACAACAAGGTGGTGGCAAAAACGACCCAAGAAAGTGAACGTGTATGGAACCAAACCTTTCAAATTCATTGTGCCCATCTAGCTGANTCAACCATCACCATTACACTGAAAACATCNTGCTCCATGTTGGGGAAATTCCACATCCAGGCACNTCGGTTGAAGGAGGAAAGTTTGATCAATGGGTTATTCCCTCTCCTCATGGAAAATGGGAAACCAAACCCACAACTGAAATTAAGGTTCATATTGTGGTTCAAGCCAGCAGATTTGGAACCAAGTTGGGCAAAACTACTAAGCAGTNGTGGGGAATTTCAAGGGCTGAGGGATGCTACATTCCCACAAAGGTCCAATTGTCAGGTTAAGCTCTACCATGATGCTCACCATTCACATGCTTTCCAACCTCCTTTTGATCTTTGTGGGGCCCCAAGAAAGCTATGGGAGGATGTCTATAAAGCCATTGAGGGTGCAAAATATTTAATTTATATTGCTGGCTGGTCCTTCAATCCTAAAATGGTTCTGGTTAGAGATCCTCAAACAGAAATCCCACATGCTAGAGAAATAAAGCTGGGTGAGCTGTTGAAGAAGAAGGCAGAAGAAGGAGTGGCTGTGAGGATTATGGTTTGGGATGATGAAACATCCTTGCCTTTCATTAAGAACAAAGGTGTGATGAACACCCATGATGAGGATGCTTTTGCTTACTTTAAGCACACAAAAGTAATATGCAGAAAGTGTCCTAGATTACACCATAAGTTCCCCACACTCTTTGCTCATCATCAGAAGACAATAACTGTAGACACCAGAGCTCCCACCTCTGTTAATGACAGAGAAATTATGAGCTTTTTGGGTGGTTTAGACTTGTGTGATGGCAGATANGATACTGAGAAACATTCATTGTTTCAAACACTTGCTAAGGAATCCCATTGCCATGACTTCTACCAGACAAACATTGCAGGAGCTAGCCTCAACAAAGGAGGGCCAAGAGAGCCTTGGCATGATGCCCATGCTTGTGTTACTGGTGAGGCTGCTTGGGATGTGTTAACCAACTTTGAGCAAAGATGGACAAAGCAATGTGACTCATCTCTTCTAGTCCCTGCAAACACCTTAGCAAATCTAATCCCCATTTGCTCAACAAGCACTTCCANGGAGAGGAATTGGAGAGTTCAAGTGTACAGGTCCATTGACCATGTCTCAGCCAGCCAGCTATTTAGAAAGCTAACTGTGGAGAGTAGCATTCATGAAGCTTGTGTGGAAGCAATTAGGCGTGCTGATAGGTTTGTGTACATTGAAAACCAATATTTCATTGGNGGGTGCCATTTGTGGCAAAAAGACAAGCATAGTGGCTGCAGGAATCTGATTCCCATTGAGATTGCACTCAAGGTGGTAAGTAAGATTAAGGCAAGAGAGAGGTTTGCAGTGTACATAGTGATACCAATGTGGCCAGAAGGAGNGCCTGAAAGTGAACCAGTTCAAGATATACTGCATTGGACCAGAGAGACAATGACAATGATGTATAAGATGATTGGAGAAGCAATAGTAGAAAGTGGGGAGCCAGGGCATCCAAGAGACTACTTGAATTTCTTCTGCCTTGCAAATAGGGAAAAGAAGGAAAATGGGGAGTATCTTGCTCCNCATTCTCCCCATCCTGAAACTCAATATTGGAATGCACAAAAAAATAGGAGATCAATGGATGGGCAAAGGGACACTGAGATTGCCATAGGAGGCTACCAGTCTCAAGATGGAGCTGATCACTACATGAATAGGGGTGATATTCATGCATACAGAATGTCATTGTGGTATGAGCACACTGGGAGTGCTGAGGAGTTGTTCTTAGAGCCAGAAAGTTTGGAATGTGTGCAGAGAGTGCGGTCAATAGGAGATCAAATGTGGGAAATCTATAGCAGTGAAGAAATTGTGGACATGGAAGGTGTGCACCTTGTGACTTACCCTGTGAAAGTAACCCAAGAAGGATCTGTGGAAGATCCAACTAGTGGTGATTACCATTTTCCTGATACAAAATCTCTAGTGAAGGGGAGGAGATCAAAAGTATTACCCCCTATCATGACCACT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00219	6390	9105	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01115	PLD1_2	EC:3.1.4.4	Glycerophospholipid metabolism	map00564
			Ether lipid metabolism	map00565
			Ras signaling pathway	map04014
			Phospholipase D signaling pathway	map04072
			Sphingolipid signaling pathway	map04071
			cAMP signaling pathway	map04024
			Endocytosis	map04144
			Fc gamma R-mediated phagocytosis	map04666
			GnRH signaling pathway	map04912
			Glutamatergic synapse	map04724
			Choline metabolism in cancer	map05231

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000219s00011555.1	PF00614.17	PLDc	299	336	6.60E-05
Glyur000219s00011555.1	PF12357.3	PLD_C	652	726	5.50E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.016
SRR1783600	control	0.016
SRR1783602	moderate drought stress	0.071
SRR1811619	moderate drought stress	0.083

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.290
DRR006520	Root Summer glycyrrhizin high producing strain	0.246
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.276
DRR006524	Root Summer glycyrrhizin low producing strain	0.336
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.649
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.630

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.115
SRR2868004	Drought Stress(Tissue:root)	3.688
SRR2967015	Control (Tissue:root)	2.433

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.053
SRR9715740	Leave	0.000
SRR9715741	Leave	0.105
SRR9715739	Root	0.000
SRR9715742	Root	0.127
SRR9715743	Root	0.097

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.096
SRR8749028	MeJA induced 9h	0.030
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.490
SRR8400027	Control-Root	2.822