Gene detail information of Glyur000219s00011559.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G42790.11.00E-122proteasome alpha subunit F1
NRXP_004499172.10PREDICTED: proteasome subunit alpha type-1-B-like [Cicer arietinum]
COGYP_003424099.17.00E-40proteasome alpha subunit [Methanobrevibacter ruminantium M1]
Swissprottr|P34066|PSA1A_ARATH2.00E-154Proteasome subunit alpha type-1-A
trEMBLtr|V7CRB8|V7CRB8_PHAVU2.00E-176Proteasome subunit alpha type {ECO:0000256|RuleBase:RU000551}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002192314626402+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02725PSMA1 EC:3.4.25.1 Proteasome map03050


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process

GO:0051603  proteolysis involved in cellular protein catabolic process


cellular_component

GO:0005839  proteasome core complex

GO:0019773  proteasome core complex, alpha-subunit complex


molecular_function

GO:0004175  endopeptidase activity

GO:0004298  threonine-type endopeptidase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000219s00011559.1PF10584.4Proteasome_A_N6281.20E-13
Glyur000219s00011559.1PF00227.21Proteasome292145.60E-57


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control39.990
SRR1783600control40.291
SRR1783602moderate drought stress28.003
SRR1811619moderate drought stress27.584

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain37.789
DRR006520Root Summer glycyrrhizin high producing strain37.731
DRR006521Root Winter glycyrrhizin high producing strain26.321
DRR006522Root Winter glycyrrhizin high producing strain25.602
DRR006523Root Summer glycyrrhizin low producing strain35.391
DRR006524Root Summer glycyrrhizin low producing strain35.045
DRR006525Leaf Summer glycyrrhizin high producing strain22.319
DRR006526Leaf Summer glycyrrhizin high producing strain22.106

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)59.915
SRR2868004Drought Stress(Tissue:root)35.766
SRR2967015Control (Tissue:root)36.732

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave35.701
SRR9715740Leave36.515
SRR9715741Leave30.861
SRR9715739Root41.661
SRR9715742Root44.164
SRR9715743Root40.482

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h62.555
SRR8749028MeJA induced 9h33.833
SRR8749029MeJA induced 9h37.279
SRR8749030Uninduced11.569
SRR8749031Uninduced3.233
SRR8749032Uninduced6.229

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root64.593
SRR8400027Control-Root61.526

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved