Gene detail information of Glyur000221s00012520.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G35790.20phospholipase D delta
NRXP_007157859.10hypothetical protein PHAVU_002G104200g [Phaseolus vulgaris]
COGYP_003527155.11.00E-11phospholipase D [Nitrosococcus halophilus Nc 4]
Swissprottr|Q9C5Y0|PLDD1_ARATH0Phospholipase D delta
trEMBLtr|V7CKG5|V7CKG5_PHAVU0Phospholipase D {ECO:0000256|PIRNR:PIRNR036470}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00221160244167721-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01115PLD1_2 EC:3.1.4.4 Glycerophospholipid metabolism map00564
Ether lipid metabolismmap00565
Ras signaling pathwaymap04014
Phospholipase D signaling pathwaymap04072
Sphingolipid signaling pathwaymap04071
cAMP signaling pathwaymap04024
Endocytosismap04144
Fc gamma R-mediated phagocytosismap04666
GnRH signaling pathwaymap04912
Glutamatergic synapsemap04724
Choline metabolism in cancermap05231


Gene Ontology

molecular_function

GO:0003824  catalytic activity

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000221s00012520.2PF00168.25C2201401.40E-23
Glyur000221s00012520.2PF00614.17PLDc3073421.80E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.436
SRR1783600control5.318
SRR1783602moderate drought stress4.557
SRR1811619moderate drought stress4.455

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.204
DRR006520Root Summer glycyrrhizin high producing strain3.133
DRR006521Root Winter glycyrrhizin high producing strain3.460
DRR006522Root Winter glycyrrhizin high producing strain3.377
DRR006523Root Summer glycyrrhizin low producing strain3.255
DRR006524Root Summer glycyrrhizin low producing strain3.292
DRR006525Leaf Summer glycyrrhizin high producing strain2.751
DRR006526Leaf Summer glycyrrhizin high producing strain2.826

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.117
SRR2868004Drought Stress(Tissue:root)6.964
SRR2967015Control (Tissue:root)6.382

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.981
SRR9715740Leave2.238
SRR9715741Leave2.719
SRR9715739Root1.639
SRR9715742Root6.268
SRR9715743Root4.695

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.507
SRR8749028MeJA induced 9h12.180
SRR8749029MeJA induced 9h12.225
SRR8749030Uninduced2.198
SRR8749031Uninduced4.243
SRR8749032Uninduced5.200

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.646
SRR8400027Control-Root6.972

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved