Gene detail information of Glyur000224s00017361.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G04870.10calcium dependent protein kinase 1
NRXP_004498060.10PREDICTED: calcium-dependent protein kinase 1-like isoform X1 [Cicer arietinum]
COGYP_642814.16.00E-26serine/threonine protein kinase [Rubrobacter xylanophilus DSM 9941]
Swissprottr|Q06850|CDPK1_ARATH0Calcium-dependent protein kinase 1
trEMBLtr|V7BJZ6|V7BJZ6_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW17370.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002243847343745-


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:4.2.1


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13412CPK EC:2.7.11.1 Plant-pathogen interaction map04626
Toxoplasmosismap05145


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005509  calcium ion binding

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000224s00017361.2PF00069.20Pkinase1143719.30E-68
Glyur000224s00017361.2PF13499.1EF-hand_74194781.60E-12
Glyur000224s00017361.2PF13499.1EF-hand_74915491.90E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control55.183
SRR1783600control55.874
SRR1783602moderate drought stress31.373
SRR1811619moderate drought stress31.421

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain40.111
DRR006520Root Summer glycyrrhizin high producing strain39.502
DRR006521Root Winter glycyrrhizin high producing strain19.775
DRR006522Root Winter glycyrrhizin high producing strain19.433
DRR006523Root Summer glycyrrhizin low producing strain35.234
DRR006524Root Summer glycyrrhizin low producing strain35.161
DRR006525Leaf Summer glycyrrhizin high producing strain18.598
DRR006526Leaf Summer glycyrrhizin high producing strain18.858

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)90.984
SRR2868004Drought Stress(Tissue:root)78.575
SRR2967015Control (Tissue:root)68.823

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave53.408
SRR9715740Leave52.636
SRR9715741Leave57.212
SRR9715739Root3.993
SRR9715742Root32.595
SRR9715743Root26.439

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h84.223
SRR8749028MeJA induced 9h68.326
SRR8749029MeJA induced 9h62.062
SRR8749030Uninduced40.990
SRR8749031Uninduced50.813
SRR8749032Uninduced31.831

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root70.314
SRR8400027Control-Root65.485

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved