Gene detail information of Glyur000245s00014681.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G21720.12.00E-75proteasome beta subunit C1
NRAFK33992.15.85E-95unknown [Lotus japonicus]
COGYP_686783.14.00E-1420S proteasome, beta subunit [Methanocella arvoryzae MRE50]
Swissprottr|O65084|PSB3_PICMA3.00E-94Proteasome subunit beta type-3
trEMBLtr|I3S150|I3S150_LOTJA2.00E-95Proteasome subunit beta type {ECO:0000256|RuleBase:RU004203}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002456534270726-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02735PSMB3 EC:3.4.25.1 Proteasome map03050


Gene Ontology

biological_process

GO:0051603  proteolysis involved in cellular protein catabolic process


cellular_component

GO:0005839  proteasome core complex


molecular_function

GO:0004175  endopeptidase activity

GO:0004298  threonine-type endopeptidase activity

GO:0005515  protein binding

GO:0008270  zinc ion binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000245s00014681.1PF00227.21Proteasome71551.60E-29
Glyur000245s00014681.1PF13639.1zf-RING_22933341.50E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control34.878
SRR1783600control34.771
SRR1783602moderate drought stress27.698
SRR1811619moderate drought stress27.662

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain29.772
DRR006520Root Summer glycyrrhizin high producing strain27.666
DRR006521Root Winter glycyrrhizin high producing strain32.105
DRR006522Root Winter glycyrrhizin high producing strain31.204
DRR006523Root Summer glycyrrhizin low producing strain23.888
DRR006524Root Summer glycyrrhizin low producing strain23.021
DRR006525Leaf Summer glycyrrhizin high producing strain12.408
DRR006526Leaf Summer glycyrrhizin high producing strain12.514

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)30.142
SRR2868004Drought Stress(Tissue:root)28.147
SRR2967015Control (Tissue:root)22.945

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.843
SRR9715740Leave13.398
SRR9715741Leave22.036
SRR9715739Root18.186
SRR9715742Root24.991
SRR9715743Root22.687

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h27.011
SRR8749028MeJA induced 9h22.065
SRR8749029MeJA induced 9h20.928
SRR8749030Uninduced11.516
SRR8749031Uninduced11.164
SRR8749032Uninduced8.893

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root35.086
SRR8400027Control-Root33.557

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved