Gene detail information of Glyur000252s00012666.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G35670.10calcium-dependent protein kinase 2
NRKHN17436.10Calcium-dependent protein kinase SK5 [Glycine soja]
COGYP_642814.15.00E-26serine/threonine protein kinase [Rubrobacter xylanophilus DSM 9941]
Swissprottr|P28583|CDPK_SOYBN0Calcium-dependent protein kinase SK5
trEMBLtr|I1K557|I1K557_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G33240.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00252113646118430+


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:4.2.1


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13412CPK EC:2.7.11.1 Plant-pathogen interaction map04626
Toxoplasmosismap05145


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005509  calcium ion binding

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000252s00012666.1PF00069.20Pkinase302881.20E-73
Glyur000252s00012666.1PF13499.1EF-hand_73474065.80E-13
Glyur000252s00012666.1PF13499.1EF-hand_74194771.30E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.861
SRR1783600control20.320
SRR1783602moderate drought stress16.002
SRR1811619moderate drought stress16.696

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain27.992
DRR006520Root Summer glycyrrhizin high producing strain28.345
DRR006521Root Winter glycyrrhizin high producing strain34.591
DRR006522Root Winter glycyrrhizin high producing strain33.757
DRR006523Root Summer glycyrrhizin low producing strain30.496
DRR006524Root Summer glycyrrhizin low producing strain30.411
DRR006525Leaf Summer glycyrrhizin high producing strain21.546
DRR006526Leaf Summer glycyrrhizin high producing strain21.718

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)49.022
SRR2868004Drought Stress(Tissue:root)56.836
SRR2967015Control (Tissue:root)53.324

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave23.073
SRR9715740Leave30.294
SRR9715741Leave24.994
SRR9715739Root2.346
SRR9715742Root13.681
SRR9715743Root10.495

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h101.559
SRR8749028MeJA induced 9h81.233
SRR8749029MeJA induced 9h102.865
SRR8749030Uninduced210.274
SRR8749031Uninduced185.128
SRR8749032Uninduced133.217

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root40.830
SRR8400027Control-Root33.475

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved