Gene detail information of Glyur000254s00017611.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G12180.10calcium-dependent protein kinase 17
NRXP_003617233.10Calcium dependent protein kinase [Medicago truncatula]
COGYP_642814.12.00E-26serine/threonine protein kinase [Rubrobacter xylanophilus DSM 9941]
Swissprottr|Q9FMP5|CDPKH_ARATH0Calcium-dependent protein kinase 17
trEMBLtr|G7K320|G7K320_MEDTR0Calmodulin-domain kinase CDPK protein {ECO:0000313|EMBL:AET00192.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00254139702143097+


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:4.2.1


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13412CPK EC:2.7.11.1 Plant-pathogen interaction map04626
Toxoplasmosismap05145


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005509  calcium ion binding

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000254s00017611.1PF00069.20Pkinase753331.80E-71
Glyur000254s00017611.1PF13499.1EF-hand_73814401.70E-14
Glyur000254s00017611.1PF13499.1EF-hand_74535125.70E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.156
SRR1783600control1.252
SRR1783602moderate drought stress1.627
SRR1811619moderate drought stress1.452

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.152
DRR006520Root Summer glycyrrhizin high producing strain0.808
DRR006521Root Winter glycyrrhizin high producing strain1.640
DRR006522Root Winter glycyrrhizin high producing strain1.477
DRR006523Root Summer glycyrrhizin low producing strain1.067
DRR006524Root Summer glycyrrhizin low producing strain0.872
DRR006525Leaf Summer glycyrrhizin high producing strain1.486
DRR006526Leaf Summer glycyrrhizin high producing strain1.387

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.034
SRR2868004Drought Stress(Tissue:root)1.403
SRR2967015Control (Tissue:root)0.951

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.400
SRR9715740Leave1.808
SRR9715741Leave2.233
SRR9715739Root0.377
SRR9715742Root1.748
SRR9715743Root1.395

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.764
SRR8749028MeJA induced 9h1.928
SRR8749029MeJA induced 9h2.698
SRR8749030Uninduced3.038
SRR8749031Uninduced3.282
SRR8749032Uninduced2.915

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.366
SRR8400027Control-Root1.090

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved