Gene detail information of Glyur000256s00016243.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G27020.13.00E-11320S proteasome alpha subunit G1
NRNP_001241123.13.75E-173uncharacterized protein LOC100820387 [Glycine max]
COGNP_613670.11.00E-40proteasome subunit alpha [Methanopyrus kandleri AV19]
Swissprottr|O23715|PSA3_ARATH3.00E-162Proteasome subunit alpha type-3
trEMBLtr|C6TG97|C6TG97_SOYBN1.00E-173Proteasome subunit alpha type {ECO:0000256|RuleBase:RU000551}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002564172647997-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02727PSMA3 EC:3.4.25.1 Proteasome map03050


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process

GO:0051603  proteolysis involved in cellular protein catabolic process


cellular_component

GO:0005839  proteasome core complex

GO:0019773  proteasome core complex, alpha-subunit complex


molecular_function

GO:0004175  endopeptidase activity

GO:0004298  threonine-type endopeptidase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000256s00016243.1PF10584.4Proteasome_A_N8301.30E-13
Glyur000256s00016243.1PF00227.21Proteasome311979.80E-47


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control48.886
SRR1783600control48.759
SRR1783602moderate drought stress38.855
SRR1811619moderate drought stress38.208

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain127.477
DRR006520Root Summer glycyrrhizin high producing strain126.168
DRR006521Root Winter glycyrrhizin high producing strain76.858
DRR006522Root Winter glycyrrhizin high producing strain75.387
DRR006523Root Summer glycyrrhizin low producing strain101.629
DRR006524Root Summer glycyrrhizin low producing strain101.974
DRR006525Leaf Summer glycyrrhizin high producing strain65.626
DRR006526Leaf Summer glycyrrhizin high producing strain65.177

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)251.634
SRR2868004Drought Stress(Tissue:root)198.382
SRR2967015Control (Tissue:root)201.561

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave123.693
SRR9715740Leave122.403
SRR9715741Leave131.003
SRR9715739Root53.741
SRR9715742Root104.131
SRR9715743Root95.686

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h167.680
SRR8749028MeJA induced 9h165.260
SRR8749029MeJA induced 9h162.616
SRR8749030Uninduced75.440
SRR8749031Uninduced56.298
SRR8749032Uninduced55.497

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root203.392
SRR8400027Control-Root192.186

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved