Gene detail information of Glyur000276s00017158.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G63110.10histone deacetylase 6
NRXP_003601202.10Histone deacetylase [Medicago truncatula]
COGYP_008089142.15.00E-58Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chthonomonas calidirosea T49]
Swissprottr|Q9FML2|HDA6_ARATH0Histone deacetylase 6
trEMBLtr|G7J4T5|G7J4T5_MEDTR0Histone deacetylase {ECO:0000256|PIRNR:PIRNR037913}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002766927973935-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K06067HDAC1_2 EC:3.5.1.98 Notch signaling pathway map04330
Cell cyclemap04110
Thyroid hormone signaling pathwaymap04919
Longevity regulating pathway - multiple speciesmap04213
Pathways in cancermap05200
Transcriptional misregulation in cancersmap05202
Viral carcinogenesismap05203
Chronic myeloid leukemiamap05220
Huntington's diseasemap05016
Alcoholismmap05034
Epstein-Barr virus infectionmap05169


Gene Ontology

biological_process

GO:0016575  histone deacetylation


molecular_function

GO:0004407  histone deacetylase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000276s00017158.1PF00850.14Hist_deacetyl433401.50E-78


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control33.970
SRR1783600control34.363
SRR1783602moderate drought stress53.392
SRR1811619moderate drought stress53.825

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain43.452
DRR006520Root Summer glycyrrhizin high producing strain42.941
DRR006521Root Winter glycyrrhizin high producing strain59.626
DRR006522Root Winter glycyrrhizin high producing strain57.259
DRR006523Root Summer glycyrrhizin low producing strain46.477
DRR006524Root Summer glycyrrhizin low producing strain46.395
DRR006525Leaf Summer glycyrrhizin high producing strain14.940
DRR006526Leaf Summer glycyrrhizin high producing strain15.074

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)47.817
SRR2868004Drought Stress(Tissue:root)53.662
SRR2967015Control (Tissue:root)62.332

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave19.234
SRR9715740Leave20.765
SRR9715741Leave23.449
SRR9715739Root20.959
SRR9715742Root30.892
SRR9715743Root30.087

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h30.190
SRR8749028MeJA induced 9h31.264
SRR8749029MeJA induced 9h18.831
SRR8749030Uninduced15.341
SRR8749031Uninduced7.314
SRR8749032Uninduced10.948

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root49.469
SRR8400027Control-Root44.827

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved