Gene detail information of Glyur000301s00024490.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G39840.12.00E-139type one serine/threonine protein phosphatase 4
NRAES61004.20serine/threonine-protein phosphatase PP1 [Medicago truncatula]
COGYP_008797523.18.00E-33protein phosphatase [Candidatus Caldiarchaeum subterraneum]
Swissprottr|P48489|PP1_ORYSJ1.00E-177Serine/threonine-protein phosphatase PP1
trEMBLtr|G7I3V0|G7I3V0_MEDTR0Serine/threonine-protein phosphatase {ECO:0000256|RuleBase:RU004273}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00301121269124586+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K06269PPP1C EC:3.1.3.16 mRNA surveillance pathway map03015
Hippo signaling pathwaymap04390
cAMP signaling pathwaymap04024
cGMP - PKG signaling pathwaymap04022
Meiosis - yeastmap04113
Oocyte meiosismap04114
Focal adhesionmap04510
Regulation of actin cytoskeletonmap04810
Platelet activationmap04611
Insulin signaling pathwaymap04910
Oxytocin signaling pathwaymap04921
Adrenergic signaling in cardiomyocytesmap04261
Vascular smooth muscle contractionmap04270
Dopaminergic synapsemap04728
Long-term potentiationmap04720
Inflammatory mediator regulation of TRP channelsmap04750
Proteoglycans in cancermap05205
Amphetamine addictionmap05031
Alcoholismmap05034
Insulin resistancemap04931
Herpes simplex infectionmap05168


Gene Ontology

molecular_function

GO:0016787  hydrolase activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000301s00024490.1PF00149.23Metallophos542271.80E-37


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control57.267
SRR1783600control57.657
SRR1783602moderate drought stress63.653
SRR1811619moderate drought stress62.703

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain53.979
DRR006520Root Summer glycyrrhizin high producing strain55.990
DRR006521Root Winter glycyrrhizin high producing strain64.854
DRR006522Root Winter glycyrrhizin high producing strain64.128
DRR006523Root Summer glycyrrhizin low producing strain103.365
DRR006524Root Summer glycyrrhizin low producing strain102.063
DRR006525Leaf Summer glycyrrhizin high producing strain45.722
DRR006526Leaf Summer glycyrrhizin high producing strain45.952

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)67.222
SRR2868004Drought Stress(Tissue:root)82.854
SRR2967015Control (Tissue:root)78.806

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave45.340
SRR9715740Leave68.707
SRR9715741Leave63.753
SRR9715739Root58.016
SRR9715742Root70.703
SRR9715743Root66.373

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h40.235
SRR8749028MeJA induced 9h76.379
SRR8749029MeJA induced 9h130.677
SRR8749030Uninduced25.039
SRR8749031Uninduced22.763
SRR8749032Uninduced60.471

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root79.280
SRR8400027Control-Root76.897

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved