Gene detail information of Glyur000325s00013498.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G56450.15.00E-3420S proteasome beta subunit G1
NRXP_004512943.12.44E-61PREDICTED: proteasome subunit beta type-4-like [Cicer arietinum]
Swissprottr|Q7DLR9|PSB4_ARATH8.00E-41Proteasome subunit beta type-4 (Precursor)
trEMBLtr|A0A068UF04|A0A068UF04_COFCA2.00E-67Proteasome subunit beta type {ECO:0000256|RuleBase:RU004203}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003255179755203+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02736PSMB4 EC:3.4.25.1 Proteasome map03050


Gene Ontology

biological_process

GO:0051603  proteolysis involved in cellular protein catabolic process


cellular_component

GO:0005839  proteasome core complex


molecular_function

GO:0004175  endopeptidase activity

GO:0004298  threonine-type endopeptidase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000325s00013498.1PF00227.21Proteasome16771.10E-12
Glyur000325s00013498.1PF00227.21Proteasome791224.10E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control37.946
SRR1783600control38.607
SRR1783602moderate drought stress26.180
SRR1811619moderate drought stress26.585

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain54.806
DRR006520Root Summer glycyrrhizin high producing strain53.374
DRR006521Root Winter glycyrrhizin high producing strain64.955
DRR006522Root Winter glycyrrhizin high producing strain62.104
DRR006523Root Summer glycyrrhizin low producing strain39.421
DRR006524Root Summer glycyrrhizin low producing strain38.187
DRR006525Leaf Summer glycyrrhizin high producing strain26.462
DRR006526Leaf Summer glycyrrhizin high producing strain27.357

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)122.119
SRR2868004Drought Stress(Tissue:root)111.027
SRR2967015Control (Tissue:root)94.365

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave39.402
SRR9715740Leave36.297
SRR9715741Leave41.294
SRR9715739Root31.003
SRR9715742Root32.327
SRR9715743Root32.020

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h99.396
SRR8749028MeJA induced 9h68.369
SRR8749029MeJA induced 9h86.503
SRR8749030Uninduced38.891
SRR8749031Uninduced41.728
SRR8749032Uninduced40.981

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root72.386
SRR8400027Control-Root72.694

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved