Gene detail information of Glyur000334s00019201.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G42790.14.00E-122proteasome alpha subunit F1
NRXP_004499172.10PREDICTED: proteasome subunit alpha type-1-B-like [Cicer arietinum]
COGYP_003424099.14.00E-41proteasome alpha subunit [Methanobrevibacter ruminantium M1]
Swissprottr|O23712|PSA1B_ARATH7.00E-154Proteasome subunit alpha type-1-B
trEMBLtr|V7CRB8|V7CRB8_PHAVU0Proteasome subunit alpha type {ECO:0000256|RuleBase:RU000551}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00334162021166064+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02725PSMA1 EC:3.4.25.1 Proteasome map03050


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process

GO:0051603  proteolysis involved in cellular protein catabolic process


cellular_component

GO:0005839  proteasome core complex

GO:0019773  proteasome core complex, alpha-subunit complex


molecular_function

GO:0004175  endopeptidase activity

GO:0004298  threonine-type endopeptidase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000334s00019201.1PF10584.4Proteasome_A_N6282.90E-11
Glyur000334s00019201.1PF00227.21Proteasome292143.80E-56


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control59.929
SRR1783600control62.187
SRR1783602moderate drought stress52.150
SRR1811619moderate drought stress52.508

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain107.545
DRR006520Root Summer glycyrrhizin high producing strain106.488
DRR006521Root Winter glycyrrhizin high producing strain127.335
DRR006522Root Winter glycyrrhizin high producing strain126.237
DRR006523Root Summer glycyrrhizin low producing strain79.845
DRR006524Root Summer glycyrrhizin low producing strain82.668
DRR006525Leaf Summer glycyrrhizin high producing strain59.553
DRR006526Leaf Summer glycyrrhizin high producing strain59.970

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)194.779
SRR2868004Drought Stress(Tissue:root)159.162
SRR2967015Control (Tissue:root)142.650

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave94.887
SRR9715740Leave85.590
SRR9715741Leave106.026
SRR9715739Root126.695
SRR9715742Root114.428
SRR9715743Root111.900

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h209.402
SRR8749028MeJA induced 9h96.758
SRR8749029MeJA induced 9h155.046
SRR8749030Uninduced65.027
SRR8749031Uninduced73.159
SRR8749032Uninduced111.896

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root133.997
SRR8400027Control-Root125.540

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved