Gene detail

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Gene detail information of Glyur000447s00016654.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G02305.1	2.00E-129	Cysteine proteinases superfamily protein
NR	XP_003554589.1	0	PREDICTED: cathepsin B-like [Glycine max]
COG	YP_005006029.1	3.00E-17	Dipeptidyl-peptidase I [Niastella koreensis GR20-10]
Swissprot	tr\|Q40143\|CYSP3_SOLLC	3.00E-26	Cysteine proteinase 3 (Precursor)
trEMBL	tr\|I1NBK8\|I1NBK8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G41120.1}

Sequence

Transcript Sequence

>Glyur000447s00016654.2
TATCCACTCCCACGACCAAAATGGCTCCAACTCTTCTGCCCCTGGCAACCTTGTTTCTAGCTCTCTCCGCATCTTATCTCTGGATCGCTGGGGCGGAAACAGATCAGCTTACTAGTCTCAAGCTTGACTCTCGTATTCTTCAGGTTGGACAATTTAAGCGCCTTCTTGGACTCAAACAAACGCCGATCAATGAACTGAGAACTACACCTGGTCACTGTGGTTCTTGTTGGGCATTTGGTGCTGTTGAATCACTATCAGATCGCTTTTGCATTCATTTTGACGTGAATGTATCTCTCTCTGTTAATGACCTTCTTGCATGCTGTGGTTTCCTTTGTGGGTCTGGTTGTGACGGGGGTTATCCCATTTATGCATGGAGATACTTAGCTCACCATGGAGTGGTCACTGAAGAGTGTGACCCATACTTCGATCAGATTGGCTGTTCTCATCCTGGTTGTGAGCCAGGATATGGAACTCCCAAGTGCGTTAAAAAGTGTGTAAATGGGAACCAGGTTTGGAAGAAGTCAAAGCACTACAGTGTCAATGCATACAGGGTCAACTCTGATCCCTATGATATCATGGCAGAAGTTTATAAGAATGGGCCAGTTGAAGTCGCATTCACTGTTTTTGAGGACTTCGCTCACTACAAATCAGGCGTTTACAAACACATCACAGGTTATGCACTAGGCGGTCATGCAGTAAAGCTGATTGGGTGGGGAACAAGTGATGATGGGGAGGACTATTGGCTTCTCGCAAACCAGTGGAATACAAACTGGGGAGATGATGGNTACTTCAAGATCAGGAGAGGGACAAACGAGTGTGGGATTGAAGAAGATGTTACTGCTGGTTTGCCTTCCACCAAAAATCTTGTAAGAGAGGTGACCGACACGGATGCTGATGCTGATGCTTCATTCTGAATGTAAAAATATTTATTTATTTATTTATTACCTTACCAATTAGATTCTGTATTGGCATTGCAAAATCTGCACCAAATGTTGTCTGTAATCTGTATCGTATCACGTTTTAAGTAGAACGTTCTAAATCATGATTATGAATTTA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00447	129203	132767	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01363	CTSB	EC:3.4.22.1	Lysosome	map04142
			Autophagy - animal	map04140
			Apoptosis	map04210
			NOD-like receptor signaling pathway	map04621
			Antigen processing and presentation	map04612
			Renin secretion	map04924

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function GO:0008234 cysteine-type peptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000447s00016654.2	PF00112.18	Peptidase_C1	64	274	1.90E-59

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	86.864
SRR1783600	control	85.261
SRR1783602	moderate drought stress	104.765
SRR1811619	moderate drought stress	103.452

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	168.242
DRR006520	Root Summer glycyrrhizin high producing strain	158.751
DRR006521	Root Winter glycyrrhizin high producing strain	253.794
DRR006522	Root Winter glycyrrhizin high producing strain	242.348
DRR006523	Root Summer glycyrrhizin low producing strain	185.065
DRR006524	Root Summer glycyrrhizin low producing strain	177.705
DRR006525	Leaf Summer glycyrrhizin high producing strain	126.790
DRR006526	Leaf Summer glycyrrhizin high producing strain	125.556

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	135.178
SRR2868004	Drought Stress(Tissue:root)	149.420
SRR2967015	Control (Tissue:root)	174.754

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	145.415
SRR9715740	Leave	137.602
SRR9715741	Leave	171.519
SRR9715739	Root	66.094
SRR9715742	Root	91.052
SRR9715743	Root	76.559

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	51.036
SRR8749028	MeJA induced 9h	61.157
SRR8749029	MeJA induced 9h	36.453
SRR8749030	Uninduced	44.980
SRR8749031	Uninduced	59.156
SRR8749032	Uninduced	27.329

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	235.412
SRR8400027	Control-Root	264.560