Gene detail

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Gene detail information of Glyur000447s00016657.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G02305.1	3.00E-127	Cysteine proteinases superfamily protein
NR	XP_003554589.1	0	PREDICTED: cathepsin B-like [Glycine max]
COG	YP_005006029.1	1.00E-16	Dipeptidyl-peptidase I [Niastella koreensis GR20-10]
Swissprot	tr\|Q40143\|CYSP3_SOLLC	4.00E-26	Cysteine proteinase 3 (Precursor)
trEMBL	tr\|I1NBK8\|I1NBK8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G41120.1}

Sequence

Transcript Sequence

>Glyur000447s00016657.2
TTCGATTCATTTTAATTTTAGTTCTATATCCACTCCCTCGACCAAAATGGCTCCAAGTCTTCTGCCCCTGGCTACCTTGTTTCTAGCTCTCTCCACATCTTATCTCTGGATAGCTGGGGCGGAAACAGAACAGCTCACTAGTCTCAAGCTTGACTCTCGTATTCTTCAGGTTGGACAATTTAAGCGCCTTCTCGGAGTCAAACAAACGCGGATCAATGAACTGAGAAGTACACCTGGTCACTGTGGTTCTTGTTGGGCATTCGGTGCTGTTGAATCACTATCAGATCGCTTTTGCATTCATTTTGACGTGAATGTATCTCTCTCTGTTAATGACCTTCTTGCATGCTGTGGTTTCCTTTGTGGGTCTGGTTGTGACGGGGGTTATCCCATTTATGCATGGAGATACTTAGCTCACCATGGAGTGGTCACTGAAGAGTGTGACCCATACTTCGATCAGATTGGCTGTTCTCATCCTGGTTGTGAGCCAGGATATGGAACTCCCAAGTGCGTTAAAAAGTGTGTAANTGGGAACCAGGTTTGGAAGAAGTCAAAGCACTACAGTGTCAATGCATACAGGGTCAACTCTGATCCCTATGATATCATGGCAGAAGTTTATAAGAATGGGCCAGTTGAAGTCGCATTCACTGTTTTTGAGGACTTCGCTCACTACAAATCAGGCGTTTACAAACACATCACAGGTTATGCACTAGGCGGTCATGCAGTAAAGCTGATTGGGTGGGGAACAAGTGATGATGGGGAGGACTATTGGCTTCTCGCAAACCAGTGGAATACAAACTGGGGAGATGATGGCTACTTCAAGATCAGGAGAGGGACAAACGAGTGTGGGATTGAAGAAGATGTTACTGCTGGTTTGCCTTCCACCAAAAATCTTGTAAGAGAGGTGACCGACACGGATGCTGATGCTGATGCTGATGCTTCATTCTGAATGTAAAAATATTTATTTATTTATTACCTTACCAATTAGATTCTGTATTGGCATTGCAAAATCTGCACCAAATGTTGTCTGTAATCTGTATCGTATCACGTTTTAAGTAGAACGTTCTAAATCATGATTATGAATTTANGATGTT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00447	158108	161706	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01363	CTSB	EC:3.4.22.1	Lysosome	map04142
			Autophagy - animal	map04140
			Apoptosis	map04210
			NOD-like receptor signaling pathway	map04621
			Antigen processing and presentation	map04612
			Renin secretion	map04924

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function GO:0008234 cysteine-type peptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000447s00016657.2	PF00112.18	Peptidase_C1	63	274	5.30E-59

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	76.999
SRR1783600	control	77.872
SRR1783602	moderate drought stress	69.290
SRR1811619	moderate drought stress	71.079

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	165.744
DRR006520	Root Summer glycyrrhizin high producing strain	170.615
DRR006521	Root Winter glycyrrhizin high producing strain	265.372
DRR006522	Root Winter glycyrrhizin high producing strain	258.300
DRR006523	Root Summer glycyrrhizin low producing strain	107.689
DRR006524	Root Summer glycyrrhizin low producing strain	111.163
DRR006525	Leaf Summer glycyrrhizin high producing strain	114.722
DRR006526	Leaf Summer glycyrrhizin high producing strain	114.051

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	45.186
SRR2868004	Drought Stress(Tissue:root)	47.630
SRR2967015	Control (Tissue:root)	59.606

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	56.044
SRR9715740	Leave	196.082
SRR9715741	Leave	63.894
SRR9715739	Root	112.166
SRR9715742	Root	29.679
SRR9715743	Root	42.798

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.316
SRR8749028	MeJA induced 9h	19.898
SRR8749029	MeJA induced 9h	15.566
SRR8749030	Uninduced	19.954
SRR8749031	Uninduced	22.443
SRR8749032	Uninduced	12.836

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	170.827
SRR8400027	Control-Root	191.106