Gene detail information of Glyur000468s00019643.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G15730.10phospholipase D alpha 1
NRAES86616.20phospholipase D alpha 1 [Medicago truncatula]
COGYP_003981721.18.00E-34phospholipase D [Achromobacter xylosoxidans A8]
Swissprottr|O04865|PLDA1_VIGUN0Phospholipase D alpha 1
trEMBLtr|G7JI50|G7JI50_MEDTR0Phospholipase D {ECO:0000256|PIRNR:PIRNR036470}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00468145466149284+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01115PLD1_2 EC:3.1.4.4 Glycerophospholipid metabolism map00564
Ether lipid metabolismmap00565
Ras signaling pathwaymap04014
Phospholipase D signaling pathwaymap04072
Sphingolipid signaling pathwaymap04071
cAMP signaling pathwaymap04024
Endocytosismap04144
Fc gamma R-mediated phagocytosismap04666
GnRH signaling pathwaymap04912
Glutamatergic synapsemap04724
Choline metabolism in cancermap05231


Gene Ontology

biological_process

GO:0046470  phosphatidylcholine metabolic process


cellular_component

GO:0016020  membrane


molecular_function

GO:0003824  catalytic activity

GO:0004630  phospholipase D activity

GO:0005509  calcium ion binding

GO:0005515  protein binding

"

Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000468s00019643.1PF00168.25C2101083.00E-13
Glyur000468s00019643.1PF00614.17PLDc3263645.20E-11
Glyur000468s00019643.1PF00614.17PLDc6556814.90E-08
Glyur000468s00019643.1PF12357.3PLD_C7267983.60E-32


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control47.819
SRR1783600control48.824
SRR1783602moderate drought stress20.345
SRR1811619moderate drought stress21.654

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain48.497
DRR006520Root Summer glycyrrhizin high producing strain48.502
DRR006521Root Winter glycyrrhizin high producing strain1.089
DRR006522Root Winter glycyrrhizin high producing strain0.808
DRR006523Root Summer glycyrrhizin low producing strain7.685
DRR006524Root Summer glycyrrhizin low producing strain7.505
DRR006525Leaf Summer glycyrrhizin high producing strain1.471
DRR006526Leaf Summer glycyrrhizin high producing strain1.384

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)146.878
SRR2868004Drought Stress(Tissue:root)62.559
SRR2967015Control (Tissue:root)85.760

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.589
SRR9715740Leave1.215
SRR9715741Leave0.877
SRR9715739Root60.016
SRR9715742Root13.580
SRR9715743Root22.639

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h51.103
SRR8749028MeJA induced 9h31.004
SRR8749029MeJA induced 9h30.214
SRR8749030Uninduced4.043
SRR8749031Uninduced2.860
SRR8749032Uninduced7.312

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root96.464
SRR8400027Control-Root81.156

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved