Gene detail information of Glyur000475s00029911.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G10660.10calmodulin-domain protein kinase cdpk isoform 2
NRXP_006588885.10PREDICTED: calcium-dependent protein kinase 1-like [Glycine max]
COGYP_004904868.12.00E-26putative serine/threonine protein kinase [Kitasatospora setae KM-6054]
Swissprottr|Q38870|CDPK2_ARATH0Calcium-dependent protein kinase 2
trEMBLtr|K7LI39|K7LI39_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G10501.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004754632351388+


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:4.2.1


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13412CPK EC:2.7.11.1 Plant-pathogen interaction map04626
Toxoplasmosismap05145


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005509  calcium ion binding

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000475s00029911.1PF00069.20Pkinase1293787.90E-64
Glyur000475s00029911.1PF13499.1EF-hand_74264852.10E-12
Glyur000475s00029911.1PF13405.1EF-hand_64985236.00E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.230
SRR1783600control0.201
SRR1783602moderate drought stress0.044
SRR1811619moderate drought stress0.082

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.336
DRR006520Root Summer glycyrrhizin high producing strain0.500
DRR006521Root Winter glycyrrhizin high producing strain0.129
DRR006522Root Winter glycyrrhizin high producing strain0.111
DRR006523Root Summer glycyrrhizin low producing strain0.494
DRR006524Root Summer glycyrrhizin low producing strain0.705
DRR006525Leaf Summer glycyrrhizin high producing strain0.108
DRR006526Leaf Summer glycyrrhizin high producing strain0.054

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.056
SRR2868004Drought Stress(Tissue:root)0.899
SRR2967015Control (Tissue:root)0.482

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.558
SRR9715740Leave0.202
SRR9715741Leave0.359
SRR9715739Root0.158
SRR9715742Root0.094
SRR9715743Root0.151

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.397
SRR8749028MeJA induced 9h0.806
SRR8749029MeJA induced 9h0.444
SRR8749030Uninduced0.538
SRR8749031Uninduced0.480
SRR8749032Uninduced0.186

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.075
SRR8400027Control-Root0.353

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved