Gene detail information of Glyur000478s00024553.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT1G68400.1 | 3.00E-51 | leucine-rich repeat transmembrane protein kinase family protein |
NR | XP_003619794.1 | 0 | Nodulation receptor kinase [Medicago truncatula] |
COG | YP_004445807.1 | 2.00E-13 | cellulosome anchoring protein cohesin subunit [Haliscomenobacter hydrossis DSM 1100] |
Swissprot | tr|Q9M9C5|Y1680_ARATH | 1.00E-84 | Probable leucine-rich repeat receptor-like protein kinase At1g68400 (Precursor) |
trEMBL | tr|G7KPP5|G7KPP5_MEDTR | 0 | LRR receptor-like kinase {ECO:0000313|EMBL:AES76012.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00478 | 153321 | 155804 | - |
Gene family
Gene family | subfamily |
---|---|
Protein Kinases Family | PPC:1.12.3 |
KEGG pathway
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000478s00024553.1 | PF08263.7 | LRRNT_2 | 16 | 57 | 2.10E-05 |
Glyur000478s00024553.1 | PF07714.12 | Pkinase_Tyr | 298 | 543 | 1.30E-20 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 0.266 |
SRR1783600 | control | 0.238 |
SRR1783602 | moderate drought stress | 0.772 |
SRR1811619 | moderate drought stress | 0.616 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 0.150 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 0.172 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 0.038 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 0.065 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 5.021 |
SRR2868004 | Drought Stress(Tissue:root) | 4.530 |
SRR2967015 | Control (Tissue:root) | 2.962 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 0.000 |
SRR9715740 | Leave | 0.000 |
SRR9715741 | Leave | 0.000 |
SRR9715739 | Root | 0.000 |
SRR9715742 | Root | 0.000 |
SRR9715743 | Root | 0.125 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 0.042 |
SRR8749028 | MeJA induced 9h | 0.780 |
SRR8749029 | MeJA induced 9h | 0.084 |
SRR8749030 | Uninduced | 0.118 |
SRR8749031 | Uninduced | 0.068 |
SRR8749032 | Uninduced | 0.031 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 0.632 |
SRR8400027 | Control-Root | 0.619 |