Gene detail information of Glyur000478s00024553.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G68400.13.00E-51leucine-rich repeat transmembrane protein kinase family protein
NRXP_003619794.10Nodulation receptor kinase [Medicago truncatula]
COGYP_004445807.12.00E-13cellulosome anchoring protein cohesin subunit [Haliscomenobacter hydrossis DSM 1100]
Swissprottr|Q9M9C5|Y1680_ARATH1.00E-84Probable leucine-rich repeat receptor-like protein kinase At1g68400 (Precursor)
trEMBLtr|G7KPP5|G7KPP5_MEDTR0LRR receptor-like kinase {ECO:0000313|EMBL:AES76012.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00478153321155804-


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:1.12.3


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04733IRAK4 EC:2.7.11.1 NF-kappa B signaling pathway map04064
Toll-like receptor signaling pathwaymap04620
Toll and Imd signaling pathwaymap04624
NOD-like receptor signaling pathwaymap04621
Neurotrophin signaling pathwaymap04722
Pertussismap05133
Tuberculosismap05152
Measlesmap05162
Influenza Amap05164
Toxoplasmosismap05145
Leishmaniasismap05140
Chagas disease (American trypanosomiasis)map05142


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000478s00024553.1PF08263.7LRRNT_216572.10E-05
Glyur000478s00024553.1PF07714.12Pkinase_Tyr2985431.30E-20


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.266
SRR1783600control0.238
SRR1783602moderate drought stress0.772
SRR1811619moderate drought stress0.616

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.150
DRR006520Root Summer glycyrrhizin high producing strain0.172
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain0.038
DRR006524Root Summer glycyrrhizin low producing strain0.065
DRR006525Leaf Summer glycyrrhizin high producing strain0.000
DRR006526Leaf Summer glycyrrhizin high producing strain0.000

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.021
SRR2868004Drought Stress(Tissue:root)4.530
SRR2967015Control (Tissue:root)2.962

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.000
SRR9715740Leave0.000
SRR9715741Leave0.000
SRR9715739Root0.000
SRR9715742Root0.000
SRR9715743Root0.125

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.042
SRR8749028MeJA induced 9h0.780
SRR8749029MeJA induced 9h0.084
SRR8749030Uninduced0.118
SRR8749031Uninduced0.068
SRR8749032Uninduced0.031

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.632
SRR8400027Control-Root0.619