Gene detail information of Glyur000509s00016402.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G35590.12.00E-130proteasome alpha subunit A1
NRXP_006592586.17.43E-177PREDICTED: proteasome subunit alpha type-6-like [Glycine max]
COGYP_003669599.13.00E-53proteasome endopeptidase complex subunit alpha [Staphylothermus hellenicus DSM 12710]
Swissprottr|O48551|PSA6_SOYBN2.00E-176Proteasome subunit alpha type-6
trEMBLtr|I1LSZ7|I1LSZ7_SOYBN3.00E-177Proteasome subunit alpha type {ECO:0000256|RuleBase:RU000551}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005094822758568+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02730PSMA6 EC:3.4.25.1 Proteasome map03050


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process

GO:0051603  proteolysis involved in cellular protein catabolic process


cellular_component

GO:0005839  proteasome core complex

GO:0019773  proteasome core complex, alpha-subunit complex


molecular_function

GO:0004175  endopeptidase activity

GO:0004298  threonine-type endopeptidase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000509s00016402.1PF10584.4Proteasome_A_N9311.70E-15
Glyur000509s00016402.1PF00227.21Proteasome352208.70E-54


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control52.319
SRR1783600control55.577
SRR1783602moderate drought stress34.652
SRR1811619moderate drought stress33.369

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain59.323
DRR006520Root Summer glycyrrhizin high producing strain59.334
DRR006521Root Winter glycyrrhizin high producing strain52.850
DRR006522Root Winter glycyrrhizin high producing strain51.114
DRR006523Root Summer glycyrrhizin low producing strain43.096
DRR006524Root Summer glycyrrhizin low producing strain42.420
DRR006525Leaf Summer glycyrrhizin high producing strain37.501
DRR006526Leaf Summer glycyrrhizin high producing strain34.504

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)152.071
SRR2868004Drought Stress(Tissue:root)138.066
SRR2967015Control (Tissue:root)111.910

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave92.069
SRR9715740Leave81.114
SRR9715741Leave98.583
SRR9715739Root40.444
SRR9715742Root75.063
SRR9715743Root66.388

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h220.956
SRR8749028MeJA induced 9h99.162
SRR8749029MeJA induced 9h186.361
SRR8749030Uninduced113.790
SRR8749031Uninduced100.860
SRR8749032Uninduced102.227

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root116.534
SRR8400027Control-Root116.433

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved