Gene detail information of Glyur000509s00016403.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G05840.16.00E-6320S proteasome subunit PAA2
NRXP_006592586.16.01E-78PREDICTED: proteasome subunit alpha type-6-like [Glycine max]
COGYP_003726305.12.00E-25proteasome endopeptidase complex subunit alpha [Methanohalobium evestigatum Z-7303]
Swissprottr|O48551|PSA6_SOYBN1.00E-78Proteasome subunit alpha type-6
trEMBLtr|I1LSZ7|I1LSZ7_SOYBN2.00E-78Proteasome subunit alpha type {ECO:0000256|RuleBase:RU000551}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005095201155984-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02730PSMA6 EC:3.4.25.1 Proteasome map03050


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process

GO:0051603  proteolysis involved in cellular protein catabolic process


cellular_component

GO:0005839  proteasome core complex

GO:0019773  proteasome core complex, alpha-subunit complex


molecular_function

GO:0004175  endopeptidase activity

GO:0004298  threonine-type endopeptidase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000509s00016403.1PF10584.4Proteasome_A_N9311.30E-15
Glyur000509s00016403.1PF00227.21Proteasome35844.90E-08
Glyur000509s00016403.1PF00227.21Proteasome1301671.10E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control23.874
SRR1783600control18.682
SRR1783602moderate drought stress17.102
SRR1811619moderate drought stress18.413

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain26.904
DRR006520Root Summer glycyrrhizin high producing strain23.649
DRR006521Root Winter glycyrrhizin high producing strain21.974
DRR006522Root Winter glycyrrhizin high producing strain22.848
DRR006523Root Summer glycyrrhizin low producing strain17.190
DRR006524Root Summer glycyrrhizin low producing strain18.087
DRR006525Leaf Summer glycyrrhizin high producing strain13.912
DRR006526Leaf Summer glycyrrhizin high producing strain19.200

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)48.610
SRR2868004Drought Stress(Tissue:root)40.595
SRR2967015Control (Tissue:root)36.315

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave22.166
SRR9715740Leave13.988
SRR9715741Leave12.558
SRR9715739Root12.111
SRR9715742Root9.229
SRR9715743Root19.529

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h44.328
SRR8749028MeJA induced 9h31.776
SRR8749029MeJA induced 9h25.535
SRR8749030Uninduced16.902
SRR8749031Uninduced12.409
SRR8749032Uninduced16.367

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root37.474
SRR8400027Control-Root38.578

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved